Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01078 ATGAACGGCGGCGGCACTGCCACCTTCCGATCCATCCTCGACAAGCCCCTGAAGCAGCTCACCGAGGATGACATTTCTCAGCTCACTCGCGAAGACTGTCGCAGATTCCTCAAAGAAAAAGGGATGCGCAGGCCTTCCTGGAACAAATCGCAGGCGATCCAGCAGGTCATTTCCCTCAAAGCGCTTCTCGAACCTTCCGACGATGATTCCCCTCCTCCTGCCCCCATGCACCACCATACTCATCCTCCTCAACCTCAACCGTCAAAGGCCCCGCCTCCTGAAGAACCCGCTTTTCACGCCGCCGACGACATTCAGAAATCTGCCTCTTCTGGGGAAAAACCCACGGAGACTATTAACACCAACGTTGCTAGCCCCAGAGGGTGTGCAACTAGTGGATCATTTGGCCAAATGACAATTTTCTATTGTGGTAAGGTGAATGTCTACGATGGAGTCTCACCTGATAAGGCACGAGCAATCATGCAGCTTGCTGCAAGTCCTGTCCAGTTTATTCAGGATGATCCTTTACATGGAAACACAGCAGTTTGGTCTTCTCCTTGCCACTTACCGATGGATAAGGATGCCCTTGTCCCTGTTGATACAACAATCTTTCAGGTTGCTCAAGCAGAAAAGATGGTGGAATATCCTCTGCAATACAGAGAGAAAGGGAGCATAGCTCGTGATACTGATGGTCAAGCAAGCAGAAAAGTGTCATTGCAGCGATATCTTGAAAAGCGCAAGGACAGGGGAAGATTGAAAGGCAAGAAATTTACTGGGATAACTTCATCTAACTTCGAGATGTATTTGAACCTTCCAGTGAGGGTCCCTGCCCCAAATGGGAATTCAAGCCGTAGTAGTACTAGCTCTCCACCACAGCCTAGACTGCCTCTAGTTTCCAGTGGTTCAGCTGACAACCAGCTCAAAGTTGCCCTTCCCATTGATCTCAATGACAAAGATGTTCAGGAGTGCTAA 969 0.4954 MNGGGTATFRSILDKPLKQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLEPSDDDSPPPAPMHHHTHPPQPQPSKAPPPEEPAFHAADDIQKSASSGEKPTETINTNVASPRGCATSGSFGQMTIFYCGKVNVYDGVSPDKARAIMQLAASPVQFIQDDPLHGNTAVWSSPCHLPMDKDALVPVDTTIFQVAQAEKMVEYPLQYREKGSIARDTDGQASRKVSLQRYLEKRKDRGRLKGKKFTGITSSNFEMYLNLPVRVPAPNGNSSRSSTSSPPQPRLPLVSSGSADNQLKVALPIDLNDKDVQEC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01078 322 ProSiteProfiles Tify domain profile. 130 165 IPR010399 -
Spst10g01078 322 MobiDBLite consensus disorder prediction 76 94 - -
Spst10g01078 322 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 275 IPR040390 -
Spst10g01078 322 MobiDBLite consensus disorder prediction 59 127 - -
Spst10g01078 322 MobiDBLite consensus disorder prediction 275 302 - -
Spst10g01078 322 Pfam Jas motif 231 248 IPR018467 -
Spst10g01078 322 MobiDBLite consensus disorder prediction 16 30 - -
Spst10g01078 322 SMART tify_2 130 165 IPR010399 -
Spst10g01078 322 MobiDBLite consensus disorder prediction 1 30 - -
Spst10g01078 322 MobiDBLite consensus disorder prediction 108 127 - -
Spst10g01078 322 Pfam tify domain 136 164 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01078 Spst-Chr10 11509514 11515126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01078 5 276 Tify Gene Family AT4G14720 50.000 2.44e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Spst10g01078 tify 3.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01078 - - gmx:100813937 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01078 10 11509514 11515126 Spst10g01078 10 11509514 11515126 ECH