Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01054 ATGCCTTCACTCGTTCTCTCTGACAGTGACACCACCCCCCAAGAAAATAAGAAGCACGGCGCCAGGAAAGCCAAGAGCCAATCCCCAACCATCATTGCAGAGAAGAAGAGTGCCTCCAAACTCCTCTCCAATTCCAACGCCCCCGATCCCGACCACGATGGGGTCTCGGGGAAGCTCCAGAAGAAGGCGAAGAAGCGCAAGGCTTCAGATATAGAGGCCATGGCGGCGACCAACGATGCCGACGACGAAACTAGTTCCGAGCTGGTCGAGCCCGAACCTTCTAGAGAAGACGACCACAAGAAGAAGAAAAAGAAGAAAAAGGCCAAGTCCGAGGAACAGACTTTAGTGATGGAAGCAGAGGAAAAAGAAGAGAAGAAGGAGGATCCTAATGCTGTCTCCAAATTCAGGATATCCGAACCGTTGAGGCAAAAATTAAAGGAGAAGGGCATCGAATCATTGTTTCCGATTCAGGCCATGACTTTCGATTTAGTACTCGACGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTGGCATTTGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAGCCAAAGCTTCAAGAAAGACTGGCTACGGGAGGACTCCAAGCGTTCTTGTGCTTCTACCTACTAGGGAATTGGCTTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCCATGGGATTGAGCTGTTGTTGTTTGTATGGTGGAGCTCCATATAACACTCAAGAAATTAAGCTTCGGAGAGGTGTTGATATCGTAATTGGCACACCAGGTCGTGTTAAGGATCATATCGAGAGGGGCAATATAGATCTGAGCCAACTAAAATTTCGTGTCCTTGATGAAGCAGATGAAATGCTGAGAATGGGTTTTGTTGAAGATGTTGAATTGATTCTAGGTAAGGTGGAAAATGTTAATAAAGTTCAGACTCTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCACATTGCTGCACAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTGGTTGGAAATACAAAAATGAAGGCTAGTACCAATGTGAGGCATATTGTTATCCCTTGTTCTGCCTCTGCTAGGTCCCAACTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACCGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTACCTGGAGCAAGAGCTCTTCATGGGGACATACAGCAAGCTCAACGTGAGGTTACTCTGTCTGGCTTTAGGTCTGGGAAATTCATGGCATTAGTTGCGACAAATGTGGCAGCTCGAGGTCTTGATATTAATGATGTTCAGTTAATTATCCAGTGTGAGTTCCCACGGGAGGTAGAATCCTATATCCATCGTTCTGGACGGACAGGAAGAGCAGGTAATACTGGGGTTGCTGTTACGCTTTATGATCCAAAAAGATCTAATATATCTAAAATAGAAAGAGAGTCCGGTGTAAAATTTGAACACATATCTGCCCCTCGGCCTGATGATATTGCCAAAGCTGTCGGTGGGGAAGCTGCTGAAATGATTACCCAAGTATCTGATAGTGTGATTCCGGCATTCAAAGCTACTGCCGAAGAGCTTTTGAAGAGTTCTGGTTTATCAGTTGTTGAATTGCTTGCAAAGGCTCTTGCAAAGGCTGTTGGTTATACCGAAATAAAGCAAAGATCACTTCTCACTTCCATGGAAAACTATGTTACATTGCTTCTTGAAATTGGGAAACCAATCTTCACCCCTTCTTTTGCGTATGGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTGGAGGCTGTGAAAGGTCTTTCACTCACTGCTGATGGAAATGGTGCTGTTTTTGATGTACCTGCTGAAGATTTAGATACATATCTTAGCGGTCAGGAAAATGCTGCTAATGTAAGTCTAGAGGTGTTGAAAGCTTTGCCACGTTTGCAACAGAGAGATCAATCAAGGGGTGGTAGATTTGGTGATGGTGGTGGTCGTGGTGGTGGGCACAGGTTTGGAAGAGGAGGAGGAGGCAGGAACGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGAAGAGGTGGTCGTGGCAACTGGGGTGGAAAGAGATGGTGA 2145 0.4564 MPSLVLSDSDTTPQENKKHGARKAKSQSPTIIAEKKSASKLLSNSNAPDPDHDGVSGKLQKKAKKRKASDIEAMAATNDADDETSSELVEPEPSREDDHKKKKKKKKAKSEEQTLVMEAEEKEEKKEDPNAVSKFRISEPLRQKLKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRTPSVLVLLPTRELACQVHADFEVYGGAMGLSCCCLYGGAPYNTQEIKLRRGVDIVIGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSATLPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVIPCSASARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQAQREVTLSGFRSGKFMALVATNVAARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVAVTLYDPKRSNISKIERESGVKFEHISAPRPDDIAKAVGGEAAEMITQVSDSVIPAFKATAEELLKSSGLSVVELLAKALAKAVGYTEIKQRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLSLTADGNGAVFDVPAEDLDTYLSGQENAANVSLEVLKALPRLQQRDQSRGGRFGDGGGRGGGHRFGRGGGGRNGRFSNDRFSNGGGRGGRGNWGGKRW 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01054 714 Coils Coil 102 125 - -
Spst10g01054 714 Gene3D - 354 581 IPR027417 -
Spst10g01054 714 CDD SF2_C_DEAD 358 484 - -
Spst10g01054 714 CDD GUCT_RH7_like 571 656 - -
Spst10g01054 714 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 87 534 - -
Spst10g01054 714 MobiDBLite consensus disorder prediction 662 714 - -
Spst10g01054 714 SUPERFAMILY RNA-binding domain, RBD 568 651 IPR035979 GO:0003676
Spst10g01054 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 487 IPR027417 -
Spst10g01054 714 Gene3D - 75 343 IPR027417 -
Spst10g01054 714 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 287 295 IPR000629 -
Spst10g01054 714 FunFam DEAD-box ATP-dependent RNA helicase 7 581 653 - -
Spst10g01054 714 Pfam DEAD/DEAH box helicase 154 331 IPR011545 GO:0003676|GO:0005524
Spst10g01054 714 SMART helicmild6 398 475 IPR001650 -
Spst10g01054 714 SMART ultradead3 149 361 IPR014001 -
Spst10g01054 714 Gene3D - 582 653 - -
Spst10g01054 714 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 514 IPR001650 -
Spst10g01054 714 Pfam GUCT (NUC152) domain 564 659 IPR012562 GO:0003723|GO:0004386|GO:0005524
Spst10g01054 714 Pfam Helicase conserved C-terminal domain 377 475 IPR001650 -
Spst10g01054 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 343 IPR014001 -
Spst10g01054 714 CDD DEADc 141 338 - -
Spst10g01054 714 MobiDBLite consensus disorder prediction 1 131 - -
Spst10g01054 714 MobiDBLite consensus disorder prediction 109 131 - -
Spst10g01054 714 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01054 Spst-Chr10 11270176 11274634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01054 167 511 Eukaryotic Initiation Factors Gene Family AT1G72730 30.000 3.54e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01054 K16911 - gmx:100820207 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01054 10 11270176 11274634 Spst10g01054 10 11270176 11274634 ECH