Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01048 ATGCCCTCTCGACAACTCTCCACCTCATCACCACCTTCCAACCACCGCGTCTTAACCCCTCCGCTACCTTCCACCGCCTCCGTTTGCTCTTTATTCTTTTTACTTTTCCTGTGCTTCCGCAAGCGGAAACGCACCACCCCCTCCTCCGACTCAGATGCCAACCCCCCTCACCCCTTCCCCTACCCCCTCCTCCGCCGCGCCACCAACTCCTTCTCCACGCGCCTTGGCCACGGGGGCTTCGGCCCCGTCTTCGCCGGCACTCTCGCCGGTGATCCCGTAGCCGTCAAGCTCATGGACTCTGCCTCCCTACAGGGCGAGCGTGAGTTCCACAACGAACTCTTCTTCGCGTCCAGACTCCGGTCCCCCTCTCTCGTCCCCGCCATCGGCTTTTCCTCTGACCCCAAACGCCGCCGTTTCCTCCTCGTCTACCACCTCATGCACAACGGCAACCTCCACGACGCCCTCTTGCGCCGCAAAAACCCCCACCTCTCGCGCTGGAAAAACCGCTTCTCCATTATCCTCGACATCGCCAAAGCCATCCACTACCTCCACTCCCTCGACCCCCCCGTCATCCACGGCGACATCAAACCCTCTAACATTCTCCTCGACAACTCCTTCTCCGCCAAACTCGCCGACTTCGGCCTTGCGCGCTTAAAACCCCCAGTCCAAGAGTTCAAAGCAAAACTCGACGAGAAGAGAAAGGACGAGTCCGAGAGCGATGCCGGGTCGGAGTTAGAAACTCAGAGCGTGAACACAGAACAATCATTTGAAGGTAACATCGGGTCGGATTATGTGATGGATTGGATTGGGAAGGAGGTGAAGAAGGAAAGGCCGAAGGCGGTGAATGACGGTTCTTCAGCCTCGACTAGCGGAGTAGTGGAGAAGAAGAAAAGTAGGAAGAAATTGGAGTGGTGGGAGACGATGGATGATAGCGGAGTTTTGAAGAAGGAGAAGAGAAGGGTAGCGAGGGAATGGTGGAAGGAGGAGTATTCAGAAGAGCTTGCGAGGAAGACGAAGAAAAAGAAAAAGAAGGAGAAGAGAAAGGAAAAGGGAAATAAGGATGGTGTTGATTTGGAGATGGGTGATGGTGGCGTAAATGTTTACAAGAGGGAGAAGAACCGGAGTAGGAAGAGTGGTGGTAGTGTAGATTCGTGGTTGAGTGGGGAGGTACATGGAATTGGATGGAACAGCTACGATTCTGGGACTTGCAGTGGAGAAATGGTAGCCAAGAGTGGTGGTGTGAGTAGTACTCCGAGTATGAGGGGAACGGTTTTCTACGTTGCTCCTGAGTACGGTTACAATGGGGATGTTTCTGAAAAGTGTGACGTGTACAGTTTCGGTGTTTTGTTGCTTGTTATTGTTTCTGGGAGGAGGCCACTTCAGGTGACAGGGTCGCCGATATCGGAGTTTCAGCGTGCGAATTTGGTGTCTTGGGCGAGGCACTGTGCCCGGAGAGGGAAGCTTCTAGAAGTGGTGGATGAGGGTGTTGAGGGGTTGGACCAAGAGCAGGCTAGTCTGTGCGTGACGGTTGCGCTCACCTGTTTGCTAAAGTCACCTGCCCGTCGTCCTTCCATGAAGGACGTTCTTGGAATGCTGGGTGGGGAGGTGGTGCCTCCGCAGTTGCCGGTGGAGTACTCCCAACACTCTCGCAATGCTTTCCCCTTCAAGTCCAGGAAAGAAGGCCGGTGCCGGTGA 1695 0.5493 MPSRQLSTSSPPSNHRVLTPPLPSTASVCSLFFLLFLCFRKRKRTTPSSDSDANPPHPFPYPLLRRATNSFSTRLGHGGFGPVFAGTLAGDPVAVKLMDSASLQGEREFHNELFFASRLRSPSLVPAIGFSSDPKRRRFLLVYHLMHNGNLHDALLRRKNPHLSRWKNRFSIILDIAKAIHYLHSLDPPVIHGDIKPSNILLDNSFSAKLADFGLARLKPPVQEFKAKLDEKRKDESESDAGSELETQSVNTEQSFEGNIGSDYVMDWIGKEVKKERPKAVNDGSSASTSGVVEKKKSRKKLEWWETMDDSGVLKKEKRRVAREWWKEEYSEELARKTKKKKKKEKRKEKGNKDGVDLEMGDGGVNVYKREKNRSRKSGGSVDSWLSGEVHGIGWNSYDSGTCSGEMVAKSGGVSSTPSMRGTVFYVAPEYGYNGDVSEKCDVYSFGVLLLVIVSGRRPLQVTGSPISEFQRANLVSWARHCARRGKLLEVVDEGVEGLDQEQASLCVTVALTCLLKSPARRPSMKDVLGMLGGEVVPPQLPVEYSQHSRNAFPFKSRKEGRCR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01048 564 Coils Coil 327 347 - -
Spst10g01048 564 PANTHER OS07G0586332 PROTEIN 258 560 IPR044576 -
Spst10g01048 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Spst10g01048 564 MobiDBLite consensus disorder prediction 228 253 - -
Spst10g01048 564 MobiDBLite consensus disorder prediction 336 362 - -
Spst10g01048 564 SMART serkin_6 69 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01048 564 SUPERFAMILY Protein kinase-like (PK-like) 54 543 IPR011009 -
Spst10g01048 564 ProSiteProfiles Protein kinase domain profile. 69 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01048 564 Gene3D Transferase(Phosphotransferase) domain 1 399 537 - -
Spst10g01048 564 Gene3D Transferase(Phosphotransferase) domain 1 59 245 - -
Spst10g01048 564 MobiDBLite consensus disorder prediction 275 294 - -
Spst10g01048 564 Pfam Protein tyrosine and serine/threonine kinase 417 529 IPR001245 GO:0004672|GO:0006468
Spst10g01048 564 Pfam Protein tyrosine and serine/threonine kinase 71 219 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01048 Spst-Chr10 11235335 11237029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01048 22 217 Receptor kinase-like Gene Family AT2G19230 38.119 1.05e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Spst10g01048 PK_Tyr_Ser-Thr 1.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01048 - - pvu:PHAVU_007G064200g 911.753