Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01047 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAGTTTTCTAATGGTCTCCAACCGCAACACAAAATCTCCAAAGATCTGATCCTGGATGAACACAATATCGATAATTCTCCCCTTGTCGCTTACTCACTTAAAAAGTTGCGTACTAGCCGCCCCAACAAACTTTTTTATGCGGCTAACACCAGTCAAGCTAATTCCGAAGAACAATATGCAAAAAAGATGATTCACAGAGAGATTGAAAGGCAAAGGAGGCAAGAAATGGCAACCCTTCATGCCTCTCTAAGATCCCTTCTCCCTCTTCCCTTCATCAAGGGAAAGCGTTCGATATCTGATCAAATGAACGAGGCAGTGAATTACATAAACCACCTGCAAAAGAATATTAAAGAATTGAGTGACAAAAGGGATAAGCTGAAGAAGAAACTTCCCCTTAATTCCACCCTCGAAAGCTGTAAGAACAAACATGCATCTAGCGGTTTCACTGTCCACCACACTAGTGATGGAGCTGTGGGGATTGAAATCAGTGGATTCAGTGAGGAAGGGGTTTCACTTTCTAAATTGCTGGAACTAGTTTTAGAAGAGGGACTTGAAGTTGTTAGTTGTCTTTCAACTAAATTCAATGGCAGATTACTCCACAGTTTGAGGTGTGAGGTTGACAATTCCGACAGAGTAGATCTACCTGAGCTGAGAAGAAAAATTTCCAATGTAATTCCATCCTTTAGACTTTCTGAGTAA 735 0.4136 MFPLQRGNELVIQFSNGLQPQHKISKDLILDEHNIDNSPLVAYSLKKLRTSRPNKLFYAANTSQANSEEQYAKKMIHREIERQRRQEMATLHASLRSLLPLPFIKGKRSISDQMNEAVNYINHLQKNIKELSDKRDKLKKKLPLNSTLESCKNKHASSGFTVHHTSDGAVGIEISGFSEEGVSLSKLLELVLEEGLEVVSCLSTKFNGRLLHSLRCEVDNSDRVDLPELRRKISNVIPSFRLSE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01047 244 CDD bHLH_AtORG2_like 73 132 - -
Spst10g01047 244 Gene3D - 63 156 IPR036638 GO:0046983
Spst10g01047 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Spst10g01047 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 66 235 - -
Spst10g01047 244 FunFam Transcription factor bHLH126 64 152 - -
Spst10g01047 244 Coils Coil 114 141 - -
Spst10g01047 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 146 IPR036638 GO:0046983
Spst10g01047 244 SMART finulus 78 130 IPR011598 GO:0046983
Spst10g01047 244 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01047 Spst-Chr10 11229695 11230646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01047 77 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.566 3.71e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01047 HLH 5.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01047 - - pvu:PHAVU_007G064300g 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01047 10 11229695 11230646 Spst10g01047 10 11229695 11230646 ECH
Spst4g03084 4 70186198 70187314 Spst10g01047 10 11229695 11230646 PCT