Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01045 ATGAATCCTTTACACCCTTGTGATGAGTTGTATTTTCAGATGACACCTGATAATTATCATTCCCTACCTATCCTAACAACCCCAGTAGAAAATCAGATCTTGCATGATCCTGTGATGGATGTTAGTGCTCTCATTCCATGTACAAGTCAAATGGGAACTACTAAGGGCAAGCAGAGAGAAAAGGTACCTGCTTGGAGAAGAGAAGATTATAAGATAGCCACCATAGATGAAAACAAGAAGTCGATGCATAGAGAGACCGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACCCACTTTAGATCTCTTCTGCCTCTCGAATATATTAAGGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACAAATTACATCAAACACCTTGAACATAAATTGAAACAGTTGCAAGCCAAGAGGGACAAGTTTAAGAAGTTGTCCAATTTGAGTCCTGTAGTAGCTGAGAGTGGAAGCTTTAGCACTACCTATCTTCCAATATGTGTCATTGTTCATCCTTTTCCAGGAGGTCTTCAGATTAAGTGTAGTTATAGCTTCAAAAAATATGTTTTTCCTTTGTCAAGAGTGATAGATATGGTGCTTAAAGAAGGGTTTGATGTGGTCAACTGTACCTCCACTAAAACAGATGACAGGTTCATACACACTATCCGATCAGAGAAGGTTCCACATATGATGAGTGGGACTAATTACACTGAACTGCAAAGGAAGCTTGTCGAAGCAATATCATCTTCAAATTTGGAGGAGAGACTGTATGAACCTGAAAACTGTTGA 792 0.3952 MNPLHPCDELYFQMTPDNYHSLPILTTPVENQILHDPVMDVSALIPCTSQMGTTKGKQREKVPAWRREDYKIATIDENKKSMHRETEKQRRQEMTRLCTHFRSLLPLEYIKGKRSISDHMHEGTNYIKHLEHKLKQLQAKRDKFKKLSNLSPVVAESGSFSTTYLPICVIVHPFPGGLQIKCSYSFKKYVFPLSRVIDMVLKEGFDVVNCTSTKTDDRFIHTIRSEKVPHMMSGTNYTELQRKLVEAISSSNLEERLYEPENC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01045 263 Coils Coil 127 147 - -
Spst10g01045 263 CDD bHLH_AtORG2_like 79 151 - -
Spst10g01045 263 FunFam Transcription factor bHLH126 70 157 - -
Spst10g01045 263 Pfam Helix-loop-helix DNA-binding domain 79 131 IPR011598 GO:0046983
Spst10g01045 263 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 62 246 - -
Spst10g01045 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Spst10g01045 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 145 IPR036638 GO:0046983
Spst10g01045 263 Gene3D - 71 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01045 Spst-Chr10 11182746 11183857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01045 76 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 37.931 2.53e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g01045 HLH 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01045 - - gmx:100803786 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01045 10 11182746 11183857 Spst10g01045 10 11182746 11183857 ECH
Spst4g03085 4 70216582 70218890 Spst10g01045 10 11182746 11183857 PCT