Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01044 ATGATATCTACTGATGTTAAACTGCCATATTTTGAACCTGTTATACTTATCCAGAAAAAGTGGAACACCACTCATTCATCAAAACTTTCCAACTGTATGATGCTGAATGTGATAGAGAATGAAAAGTTCCAACCATCCCAAAGTGGGGAACAGGAAGGATACGTAGGAAGAATAATAGATATATTCTTCAACAAAGAAATGCACTTTAAATGTTTCTGTTGTTTTCTTTGTCAGAAAGAGCAATCCGAGATACAGAATGGCAAGGACAAGAAGAAAAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTCCGTGCAACAAACAATTTTCATCAAGATAACAAGATAGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATCGCAGTGAAGCGGTTGAAGACCATGACTGCAAAGGCAGAGATGGAATTTGCAGTGGAAGTGGAAGTACTTGGAAGGGTGAGGCATAAGAATTTGTTGGGGTTGCGTGGATTCTATGCAGGAGGTGATGAAAGGTTGATTGTGTACGATTACATGCCTAATCACAGTTTGCTCACCCATTTGCATGGTCAACTTGCCACCAATTGTTGGCTAGATTGGTCAAGAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGCTTAGCGTATTTGCACCATGAGGCCAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTGGACTCTGAGTTTCATGCCAAGGTTGCTGATTTTGGCTTTGCTAAGTTGATACCAGAGGGTGTAAGCCATCTCACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCGCCTGAATATGCGATGTGGGGGAAGGTTTCTGAGAGCTGCGATGTTTATAGTTTTGGGATTTTGCTTTTGGAGATCGTGAGTGGCAAGAAACCAATTGAGAAGCTCGCTGGAGGCGTGAAAAGGGATATAGTTCAGTGGGTTACACCGTATGTTCAAAAGGGTAACTTCACTCGTATTTCTGATTCAAAGTTAAACGGAAGATTTGATTTAGAGCAGTTGAAATCTGTCATCATGATAGCTATGAGGTGTACAGATAGTAGTCCAGAAAAAAGGCCTAACATGGTAGAAGTGGTGGAGTGGCTCAAGGGTGGCATAGGGAGGAGGAAAAAAGATATTCCAAATTTAAGTTACATGATTGGAGATGATGATAAATATGAACAAAACTATGGAGAGATTAAAAGAACAAAATCCAAGTTGAAAATACCAAGTGATAATGATCAACTCAAAATAAGGAAGTGA 1305 0.4061 MISTDVKLPYFEPVILIQKKWNTTHSSKLSNCMMLNVIENEKFQPSQSGEQEGYVGRIIDIFFNKEMHFKCFCCFLCQKEQSEIQNGKDKKKRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLATNCWLDWSRRMSIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDSEFHAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSGKKPIEKLAGGVKRDIVQWVTPYVQKGNFTRISDSKLNGRFDLEQLKSVIMIAMRCTDSSPEKRPNMVEVVEWLKGGIGRRKKDIPNLSYMIGDDDKYEQNYGEIKRTKSKLKIPSDNDQLKIRK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01044 434 CDD STKc_IRAK 118 385 - -
Spst10g01044 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Spst10g01044 434 FunFam PTI1-like tyrosine-protein kinase At3g15890 188 397 - -
Spst10g01044 434 Gene3D Transferase(Phosphotransferase) domain 1 188 393 - -
Spst10g01044 434 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Spst10g01044 434 FunFam PTI1-like tyrosine-protein kinase At3g15890 84 187 - -
Spst10g01044 434 Pfam Protein kinase domain 112 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01044 434 Gene3D Phosphorylase Kinase; domain 1 75 187 - -
Spst10g01044 434 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Spst10g01044 434 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 386 - -
Spst10g01044 434 ProSiteProfiles Protein kinase domain profile. 112 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01044 434 SMART serkin_6 112 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01044 Spst-Chr10 11173069 11180137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01044 100 390 Receptor kinase-like Gene Family AT1G60800 45.578 4.91e-83 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Spst10g01044 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01044 - - gmx:100817283 661.373