Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01038 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCGTTCGAGCTATCAGTGCTATGCGATGCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATATCTCAGACTGGCGACGAAGCTGGACATCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGCTGCTGAGAGTCAAGCATGAATCACTCCAGCGAACTCAAAGGAATCTTCTGGGAGAGGAACTTGAGACACTTAGCATGAAAGAATTGCATAGCTTAGAGAAACAACTGGATAGAACTCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACACGGGAAGGTGGTGGCTGAAGCGGTGCAGGTGGTGGTTGAAGCGGTGCAGGTGGCTGAAGCGGTGCAGATGCAGGTGGTGGTGCAGGTGGCTAAAGCAGTGCAGGTGGCTAAAGCGGTGCAGGTGGCTGAAGCAATGCATGTGGTGGCTCGCAGGGTGGTGGCTGAAGCAGTGCTGGCAGGGTGGTGCAACAATTGGGGAAGCAGTGGACAAGAGAAAAGAATGTGTTCCCTACCCCTTTTTTAG 708 0.4929 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIEKYRQCCFNISQTGDEAGHQSEQCLYQELLLLRVKHESLQRTQRNLLGEELETLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVVAEAVQVVVEAVQVAEAVQMQVVVQVAKAVQVAKAVQVAEAMHVVARRVVAEAVLAGWCNNWGSSGQEKRMCSLPLF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01038 235 Coils Coil 125 145 - -
Spst10g01038 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst10g01038 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst10g01038 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst10g01038 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst10g01038 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst10g01038 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst10g01038 235 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst10g01038 235 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Spst10g01038 235 Pfam K-box region 85 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst10g01038 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Spst10g01038 235 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Spst10g01038 235 FunFam MADS-box transcription factor 1 13 84 - -
Spst10g01038 235 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Spst10g01038 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01038 Spst-Chr10 11104609 11123548 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01038 1 168 MADS-box Gene Family AT1G24260 51.429 2.66e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst10g01038 K-box 7.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01038 K09264 - gmx:100802197 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01038 10 11104609 11123548 Spst10g01038 10 11104609 11123548 ECH
Spst10g01038 10 11104609 11123548 Spst4g01724 4 57197094 57206822 PCT