Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01033 ATGGAAGAAGGCATTACCATCCTTTTCTGTGGTCCGAGAAACATCTACAATAAATATCACTACGCTGAAAGTGGGATCCTCCTGGCTAGGGTTTCTGATGTTTTCCAGTTCTTTCTTCCACTAGCTACAGTTTCTCTTCTCTTCTTTAACTGTGACCTAAGTGGTGAGTTTTGCTTTTCTCTTAGATCATTGGTCTATGATGAAGGCATGAGCTCTTTTAACTTTCTCTCTGCTCATATTGGATGGTTTAATTTCAACCATTCTGGGAGATTGTGGACTTTAATCGAGATGGTGAGGGGAAAGGTTCAAATGAAGAAAATTGAGGATGCAACAAGCCGTCAAGTTACCTTTTCAAAGCGTCGAAGTGGTCTTCTAAAGAAAGCTTATGAGCTATCCGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCTCCCAAAATGGAAGGCTCTATGAGTTCTCAAGTTCTGAGTACGTTTTCCTTCATTTCTGCTTAAGAATTAGTACTCCATAG 513 0.4016 MEEGITILFCGPRNIYNKYHYAESGILLARVSDVFQFFLPLATVSLLFFNCDLSGEFCFSLRSLVYDEGMSSFNFLSAHIGWFNFNHSGRLWTLIEMVRGKVQMKKIEDATSRQVTFSKRRSGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSSSEYVFLHFCLRISTP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01033 170 ProSitePatterns MADS-box domain signature. 99 153 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 SMART madsneu2 97 156 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 CDD MADS_MEF2_like 99 156 IPR033896 GO:0000977|GO:0045944
Spst10g01033 170 ProSiteProfiles MADS-box domain profile. 97 157 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 SUPERFAMILY SRF-like 99 157 IPR036879 GO:0003677|GO:0046983
Spst10g01033 170 PRINTS MADS domain signature 134 155 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 PRINTS MADS domain signature 119 134 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 PRINTS MADS domain signature 99 119 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 106 153 IPR002100 GO:0003677|GO:0046983
Spst10g01033 170 Gene3D - 110 162 IPR036879 GO:0003677|GO:0046983
Spst10g01033 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 99 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01033 Spst-Chr10 11006037 11006965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01033 97 157 MADS-box Gene Family AT5G62165 83.607 4.64e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst10g01033 SRF-TF 7.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01033 - - ccaj:109812709 132.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01033 10 11006037 11006965 Spst10g01033 10 11006037 11006965 ECH