Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01022 ATGGCTATTACCAAGAGCTACACCAGAAGTGACAATTCAACTTCATATAATAGTTACAAAGTGGCAAGTTTGACCGAAACCATATTAGACACAGACCAAATCTCTAATTTGAAGGATCGATATGTTCTTGGAGAGCAGTTGGGGTGGGGGCAGTTTGGTATCATAAGAGCATGCTCTGACAAGCTGACAGGAGAGGTTTTGGCCTGCAAATCTATTGCAAGAGTTAGGTTGGTTACTTCAGATGATCTGCAGAGTGTTAAACTTGAGATTGAGATAATGACTAGGTTATCAGGGCACCCAAATGTTGTAGATCTTAAGGCGGTTTATGAAGAGGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGAGAGTTGTTTCATTTGTTAGAGAAGCATGGACGGTTTTCCGAATTTGAAGTCCGGGTTCTCTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCATGAGAATGGGGTTGTTCATAGAGATTTGAAGCCTGAAAACATTCTCTTGGTAACTAGATCTTCTTCATCTGCTATAAAACTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGGACAGAGTTTGCACGGGTTGGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTGGCAGGTGCATATAATGAAGCTGCTGATGTTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAGTCACAGATATTTGAAGCTGTTAAGACTGCTAACCTGAGGTTTCCATCTGAGCCTTGGGATTGCGTTTCTGAATCGGCTAAGGATTTGATTAGGGAAATGCTCTGCACCGAATCTTCTCAAAGGCTCACTGCCAAGGAGGTTTTGGATCATCACTGGATGCAAAACAATCAAACGTATCCTGAACAACTAAGTGAAAATAAAAGTAGAAGTTGTGGGGAGTGGAATGCTGGTAGCAACTCATTCTCTATCATGTTTATGTCCAGGAATAAAGATATCAGCTTTGGCGCTGAATCTCCTACATGTGGTGCCCAATCGCCTATATTCACATGCAAATCATCATTTTCTTCTTCCTCTTTTGAGGAACCAGTGACACCTTTTTCTGTTTCTGGTGAATTTTCATTTCAGAGCTCAGGTGCTTCCACTGATTTGGAATTTTCTTCTCCTATTCCCTCAATGCCTAGCTTTTCATTTCTCAGCTCCAGTTCTGTTGAGCAAAGGGGTTGTATATCGCAATTCCTAACTAAAACATCAAATTTAAATGCAATTTCTGGAGATTCTCCCCTTTGCTTTGGACATGATGTTAAAAAGATAGATTGCAAGCCCGTAGAGAGTAAAAGGGCTGGCGGAACAAACGGGCATTTGGCATTGGGATTCCACAACAAGAGAAACCGGACAATTGGATTTGGCGAGCATGAGCAACTTGATCTTATGGTCACTGAATCGGTCATTCGATGGTCATCATGCACCCAACTTCCTACGTCACCAAGATCGTCTCTTAGCCGTTCTTTGCTTTGGATACGCAGACTTCAATCTTCATCAATGGAATCCTCTGCCAACAACAAAGAGCAAGTGCAGCCCGCACCCGAAGACCCCGAGAAGAAAAAGAAGAAGGAAGAAAAGGCTAGAGAGAAACAATTGAAGATAGAGAAGTTTCTTCTTAAGCAAGCTCAGCAACAAGCACAGCAATCATCCAATGCTTCCAAAAAGAGTGAAAAGAAAGTTGTGAAGCGTGGTGCGGAGGATGAGAATGCCGAAGATTATGTTGATCCTGAGACTCCATTGGGTGACAAAAAGCGTATGGCTCGGCAAATGGCAAAGCAGTATAGCCCAACTGCCGTGGAGAAATCGTGGTATGAGTGGTGGGAGAAATCAAGGTTTTTTGTGGCGGATGTTAACAGCTCCAAACCACCTTTTGTTATTGTTTTGCCCCCTCCAAATGTGACTGGTGCTCTCCATATAGGTCATGCTCTAACTGCCGCAATAGAGGACACAATGATTCGGTGGAGGAGAATGTCTGGATACAATGCCTTGTGGGTGCCTGGGATGGATCATGCTGGGATTGCTACGCAGGTAGTTGTGGAGAAAAAGATAATGCGGGAAAGAAAACTAACCAGGCATGACCTGGGCCGTGAGAAATTTGTCTCTGAGGTTTGGGAGTGGAAACACAAGTATGGTGGCACGATATTACAACAATTACGCCGATTAGGAGCCTCTTTGGATTGGTCTCGTGAGTGCTTTACAATGGATGAAAGAAGATGTAAGGCTGTGACAGAGGCTTTTGTAAGGCTTTACAAGCAAGGTCTTATCTATAGGGACCTCCGTTTGGTGAATTGGGATTGTGTTTTACGAACTGCAATATCTGATATTGAGGTGGATTATATTGACATAAAAGAGAAGAGTCTACTAAAGGTTCCAGGATATGATAAACCAGTGGAGTTTGGAGTTTTAACAAAGTTTGCATACCCTTTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACGACTAGAATTGAAACTATGCTTGGCGACACTGCCATTGCCATACATCCTAATGATGACAGATATAGCCATTTTCAAGGAAAATATGCTATTCATCCATTTAATGAAAGAAAACTTCCTATAATTTGTGATGCTATTCTTGTTGATCCAAAGTTCGGAACTGGTGCTGTTAAGATTACACCTGCCCATGATCCAAATGATTTTGAGGTAGGAAAACGTCACAACCTTGAATTCATTAATGTTTTCACAGATGATGGTGAAATAAATTCCAATGGTGGGCCTGATTTTTTGGGCATGCCACGGTTCAAAGCTCGAGAGGCAGTAACAGAAGCATTACGGAAGAAGGGTCTTTATCGAGGATCTGAAAACAATGAAATGCGCCTTGGGGTTTGTTCAAGAAGCAATGATGTTGTGGAGCCCATGATAAAGCCCCAGTGGTACGTCAATTGCAATGATTTGGCCAAGCAAGCTCTTAATGCTGCTTTGGATGAGGAAAACAAAAAGCTAGAGATTGTTCCAAAACAATATTTGGCTGATTGGAAGAGATGGCTAGAAAACATTTGTGATTGGTGCATTTCACGACAGCTATGGTGGGGTCACCAAATACCTGCATGGTATGTCACTTTGGAGGATGATATGCTGCGGGAATTTGGTGCTTATACTGATCATTGGCTAGTGGCAAGAAATGAAGAGGAAGCCCAAAAAGAAGCTAGCCAGAGGTATAATGGAAAGAAGTTTCATTTAAGCCAGGATCCTGATGTTCTTGATACATGGTTTTCTTCTGGTCTTTTCCCATTATCTGTGCTGGGATGGCCTGATGACACTGAGGACCTGAAGACATTCTATCCAACTTCTGTTCTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCCCGAATGGTGATGTTAGGATTGAAGTTGGGTGGTGATGTGCCTTTTTCAAAGATCTATATGCATCCCATGGTTCGTGATGCACATGGACGCAAGATGTCCAAGTCCTTAGGAAATGTTATTGATCCCATTGAAGTGATAAATGGGATATCACTGGAAGGTCTACATAAGAGGTTAGAGGCCGGTAACTTGGACCCCAAAGAACTAGCCACTGCTATAGAGGGTCAAAAGAAGGACTTTCCAAATGGTATTGATGAATGTGGTGCTGATGCTCTCCGTTTTACATTGGTTTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAGAGGGTGGTTGGGTATCGCCAATGGTGTAATAAAATGTGGAATGCAGTACGATTTGCTATGAGCAAGCTTGGGGATGATTATATTCCACCTGCAGAATTGAATCCAGACGTGCTTCCATTTAGCTGCCAGTGGATACTCTCAGTGTTGAATAAAACCATAACAAAAACAGTGAAGTCTCTAGAATCATTTGAATTCTCACAAGCTACAACTGCTGTGTTTTCTTGGTGGCAGTATCAATTATGTGATGTATTTATCGAAGTGATTAAGCCTTACTTTACTGGTAATGATCCTAAGTTTGCTACCGAAAGACGCTTTGCACAAGATACTTTGTGGTTTTGTCTGGACAATGGCCTTCGATTGCTTCATCCGTTTATGCCTTTTGTCACGGAAGAACTGTGGCAACGCCTTCCTTCACCCAGGGAATGTAAGAGAGCAGAATCTATCATGATATGCGATTATCCATCAACAGTAGAGGGATGGAATAATGAAGCGGTGGAGAATCAGATGGATATTATTGAGTCTACTATTAAGTCTCTCAGGTCACTGGCAAAAGAAAGACGTGACAGGCGACCGGCTTTTGCTCTCTGCCGAACACAGGTGGTTACTGAGATTATTAAGAGCCATCAACTGGAGATTGTAACATTAGCTAATCTATCCTCTCTGACAGTAATTGCTGAAACTGATGCTATTCCATCTGGATATGCTGAAGCTGTTGTAAATGAAAGCATTTCTGTTTATTTAGAGTTTCAAGGAACTAATTCTGCAGAGGCAGAGCAAGGGAAGATCAAGAAGATAGATGAACTGAAGAAGCAAATAGAAAGACTAGAGAAGATGATGAATGCTCCAAGTTATGAAGAGAAGGTTTTGCCAAATATTCGAGCAAAGAACCAGGAGAAGCTAGATTCTCTAAAGGAGCGTTTATTGCTTGAGGAAACGGCTGGTCTGAGTCTCTAG 4698 0.4232 MAITKSYTRSDNSTSYNSYKVASLTETILDTDQISNLKDRYVLGEQLGWGQFGIIRACSDKLTGEVLACKSIARVRLVTSDDLQSVKLEIEIMTRLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSEFEVRVLFRHLMQMVLYCHENGVVHRDLKPENILLVTRSSSSAIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNEAADVWSAGVILYILLSGMPPFWGKTKSQIFEAVKTANLRFPSEPWDCVSESAKDLIREMLCTESSQRLTAKEVLDHHWMQNNQTYPEQLSENKSRSCGEWNAGSNSFSIMFMSRNKDISFGAESPTCGAQSPIFTCKSSFSSSSFEEPVTPFSVSGEFSFQSSGASTDLEFSSPIPSMPSFSFLSSSSVEQRGCISQFLTKTSNLNAISGDSPLCFGHDVKKIDCKPVESKRAGGTNGHLALGFHNKRNRTIGFGEHEQLDLMVTESVIRWSSCTQLPTSPRSSLSRSLLWIRRLQSSSMESSANNKEQVQPAPEDPEKKKKKEEKAREKQLKIEKFLLKQAQQQAQQSSNASKKSEKKVVKRGAEDENAEDYVDPETPLGDKKRMARQMAKQYSPTAVEKSWYEWWEKSRFFVADVNSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNALWVPGMDHAGIATQVVVEKKIMRERKLTRHDLGREKFVSEVWEWKHKYGGTILQQLRRLGASLDWSRECFTMDERRCKAVTEAFVRLYKQGLIYRDLRLVNWDCVLRTAISDIEVDYIDIKEKSLLKVPGYDKPVEFGVLTKFAYPLEGNLGEIVVATTRIETMLGDTAIAIHPNDDRYSHFQGKYAIHPFNERKLPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGEINSNGGPDFLGMPRFKAREAVTEALRKKGLYRGSENNEMRLGVCSRSNDVVEPMIKPQWYVNCNDLAKQALNAALDEENKKLEIVPKQYLADWKRWLENICDWCISRQLWWGHQIPAWYVTLEDDMLREFGAYTDHWLVARNEEEAQKEASQRYNGKKFHLSQDPDVLDTWFSSGLFPLSVLGWPDDTEDLKTFYPTSVLETGHDILFFWVARMVMLGLKLGGDVPFSKIYMHPMVRDAHGRKMSKSLGNVIDPIEVINGISLEGLHKRLEAGNLDPKELATAIEGQKKDFPNGIDECGADALRFTLVSYTAQSDKINLDIQRVVGYRQWCNKMWNAVRFAMSKLGDDYIPPAELNPDVLPFSCQWILSVLNKTITKTVKSLESFEFSQATTAVFSWWQYQLCDVFIEVIKPYFTGNDPKFATERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRECKRAESIMICDYPSTVEGWNNEAVENQMDIIESTIKSLRSLAKERRDRRPAFALCRTQVVTEIIKSHQLEIVTLANLSSLTVIAETDAIPSGYAEAVVNESISVYLEFQGTNSAEAEQGKIKKIDELKKQIERLEKMMNAPSYEEKVLPNIRAKNQEKLDSLKERLLLEETAGLSL 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01022 1565 Gene3D HUPs 611 808 IPR014729 -
Spst10g01022 1565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Spst10g01022 1565 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Spst10g01022 1565 FunFam Valine--tRNA ligase, mitochondrial 1200 1435 - -
Spst10g01022 1565 Coils Coil 540 579 - -
Spst10g01022 1565 FunFam Valine--tRNA ligase, mitochondrial 818 959 - -
Spst10g01022 1565 Coils Coil 1410 1430 - -
Spst10g01022 1565 Pfam Anticodon-binding domain of tRNA ligase 1291 1433 IPR013155 GO:0004812|GO:0006418
Spst10g01022 1565 MobiDBLite consensus disorder prediction 560 600 - -
Spst10g01022 1565 Coils Coil 1506 1526 - -
Spst10g01022 1565 PANTHER VALYL-TRNA SYNTHETASES 587 1559 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 817 967 IPR009008 GO:0002161|GO:0006418
Spst10g01022 1565 Pfam tRNA synthetases class I (I, L, M and V) 623 1246 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst10g01022 1565 Gene3D HUPs 988 1244 IPR014729 -
Spst10g01022 1565 CDD STKc_CAMK 40 298 - -
Spst10g01022 1565 CDD Anticodon_Ia_Val 1245 1384 IPR033705 -
Spst10g01022 1565 MobiDBLite consensus disorder prediction 575 589 - -
Spst10g01022 1565 CDD ValRS_core 642 1245 - -
Spst10g01022 1565 MobiDBLite consensus disorder prediction 532 547 - -
Spst10g01022 1565 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 651 662 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst10g01022 1565 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Spst10g01022 1565 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01022 1565 MobiDBLite consensus disorder prediction 560 574 - -
Spst10g01022 1565 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01022 1565 FunFam Valine--tRNA ligase, mitochondrial 937 1170 - -
Spst10g01022 1565 Gene3D Transferase(Phosphotransferase) domain 1 128 332 - -
Spst10g01022 1565 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01022 1565 Gene3D - 1251 1434 - -
Spst10g01022 1565 FunFam Phosphoenolpyruvate carboxylase kinase 128 315 - -
Spst10g01022 1565 NCBIfam valine--tRNA ligase 610 1548 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 MobiDBLite consensus disorder prediction 518 547 - -
Spst10g01022 1565 FunFam Valine--tRNA ligase, mitochondrial 612 810 - -
Spst10g01022 1565 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 1257 1512 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst10g01022 1565 SUPERFAMILY Protein kinase-like (PK-like) 39 369 IPR011009 -
Spst10g01022 1565 Hamap Valine--tRNA ligase [valS]. 610 1564 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 Gene3D - 818 963 IPR009008 GO:0002161|GO:0006418
Spst10g01022 1565 SUPERFAMILY Nucleotidylyl transferase 609 1255 - -
Spst10g01022 1565 PRINTS Valyl-tRNA synthetase signature 855 872 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 PRINTS Valyl-tRNA synthetase signature 644 655 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 PRINTS Valyl-tRNA synthetase signature 972 985 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 PRINTS Valyl-tRNA synthetase signature 1121 1139 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Spst10g01022 1565 PRINTS Valyl-tRNA synthetase signature 1090 1111 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01022 Spst-Chr10 10891929 10905183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01022 36 308 EF-hand Containing Proteins AT2G17290 50.183 5.08e-88 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Spst10g01022 tRNA-synt_1 6.8e-200 CL0039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01022 K01873 - gmx:100798111 1932.15