Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01021 ATGTTTTCCGTCGACCCACAAACAACCTCGCCGGTGTCGGGAAGTTCCCGACCGGCGCTCTCGGACGAGGAGGTGTTCTTGGCGGCGAGCCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGTCACCCGGTGTACCGCGGCATCAGGAAGAGGGACTCCGGCAAGTGGGTGTGCGAGGTGAGGGAGCCCAACAAGAAGACCAGAATTTGGCTGGGGACCTTTCTCACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCTCTCGCGCTTAGGGGAAGATCGGCCTGCCTCAATTTCGCTGACTCCGCGAGGAGGTTGCGGGTTCCAGCGACGACGGACCCCCGGGATATTCAGAAGGCGGCGGCGGAGGCCGCAGAGGCATTTGGACCAGGGAATGAATCGGGAAAGAATGATGATGCGGTTGCGGAGACGGTAGCGACGGCGACGGGGCATGAAGAAGAAGAAGCACAAGAACAAGAAGGGAGGGTGCCGGAGTATCTGAGGAACATGGTACTGATGTCGCCAACGCGCTGCTTCGAGAGTGATGAGTATGGAAGTGCCGACGTGGAATTTGACGATGCTGAAGTTTCCTTGTGGAGTTATTCGTTTTAA 627 0.5981 MFSVDPQTTSPVSGSSRPALSDEEVFLAASHPKKRAGRKKFRETRHPVYRGIRKRDSGKWVCEVREPNKKTRIWLGTFLTAEMAARAHDVAALALRGRSACLNFADSARRLRVPATTDPRDIQKAAAEAAEAFGPGNESGKNDDAVAETVATATGHEEEEAQEQEGRVPEYLRNMVLMSPTRCFESDEYGSADVEFDDAEVSLWSYSF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01021 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 206 IPR045277 GO:0003700
Spst10g01021 208 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Spst10g01021 208 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Spst10g01021 208 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Spst10g01021 208 MobiDBLite consensus disorder prediction 1 17 - -
Spst10g01021 208 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Spst10g01021 208 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Spst10g01021 208 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Spst10g01021 208 MobiDBLite consensus disorder prediction 1 23 - -
Spst10g01021 208 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Spst10g01021 208 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Spst10g01021 208 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01021 Spst-Chr10 10889977 10890603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01021 10 206 AP2-EREBP Transcription Factor Family AT5G51990 55.607 1.74e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g01021 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01021 - - pvu:PHAVU_007G066500g 321.627