Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01020 ATGGATGGCAACCCTTTTGGAAACGTGCCACTGCCACCCCCACCAATACAAGTCCCTGATAGATTCCCTCTCTCTTCCTCCTCTTCGCCGACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCGCCGGGGTCCGCTACCGGGGGACGCGGTGCCGGAGCGGAAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACGAAGCGCATTTGGCTGGGGACTTACCCGACAGCGGAAATGGCTGCGGCGGCTTATGATGTCGCGGCTCTCGCGTTGAAGGGACCCGACACGACCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCCGCCACCGATATTCGTGCGGCGGCTGCGGCCGCGGCGCAGGCTAGGATCGTGAGGGCGCCGCAGGAGAGTGGGGAAACGGTAAACCCTGATAGTGGACAGGAGTTGGAGAGGCGTGAGGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCAGTTCCTTTTCTTCTGATGATTCGCCAGGCAATTCTGATGGAGATAACCTTTGGAGTTATACCCTCTGA 618 0.5744 MDGNPFGNVPLPPPPIQVPDRFPLSSSSSPTPTTSSPSPTPSAGVRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTTLNFPNSILSYPIPASLSATDIRAAAAAAAQARIVRAPQESGETVNPDSGQELERREEYYDEDELLNMPNLLDDMARGMQVSPPRISSFSSDDSPGNSDGDNLWSYTL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01020 205 MobiDBLite consensus disorder prediction 180 205 - -
Spst10g01020 205 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Spst10g01020 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 176 - -
Spst10g01020 205 ProSiteProfiles AP2/ERF domain profile. 41 102 IPR001471 GO:0003700|GO:0006355
Spst10g01020 205 SMART rav1_2 46 108 IPR001471 GO:0003700|GO:0006355
Spst10g01020 205 MobiDBLite consensus disorder prediction 1 49 - -
Spst10g01020 205 FunFam Ethylene-responsive transcription factor 2 45 103 - -
Spst10g01020 205 Gene3D AP2/ERF domain 43 104 IPR036955 GO:0003700|GO:0006355
Spst10g01020 205 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Spst10g01020 205 MobiDBLite consensus disorder prediction 173 205 - -
Spst10g01020 205 MobiDBLite consensus disorder prediction 21 43 - -
Spst10g01020 205 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01020 Spst-Chr10 10879693 10880310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01020 47 203 AP2-EREBP Transcription Factor Family AT5G52020 58.235 1.98e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst10g01020 AP2 6.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01020 - - gmx:100776717 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03114 4 70542464 70543147 Spst10g01020 10 10879693 10880310 ECH
Spst10g01020 10 10879693 10880310 Spst10g01020 10 10879693 10880310 ECH
Spst4g03114 4 70542464 70543147 Spst10g01020 10 10879693 10880310 PCT