Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01017 ATGAGGCCTATTTTTTGTGGAAATTTTGAATATGATGCCCGGCAGTCGGAGTTGGAGCGGCTTTTTAGACGATACGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAAAGAGATGCTGAGGCTGCTATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGTAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCTTCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGCAAAATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAACGGATATAGCCCTGAGAGAGGCCGTGATCGTCAACGAGATAGAAGCCGTGATGGAAGACGGTCCCCTAGTCCTTATAGGAGAGAAAGAGGCAGTCCTGATTATGGCCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGTAGCCCTGACTATGGTCGTGACCGAAGCCGTAGCAGAAGCCCCCCTAGGAGAGAGCGAGCTAGCCCTGCATATGGGCGTAGAAGCCCTAGTCCATATAGAAGAGAAAGGGAGGGTTCTGACCCAGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGCATTTCTCCTTCTCATAGTCCCGAAGAAAGGGGGAGGAAAAGCCCTCAAAATGGTCGCGGTTCTAGCCAGAGTCCTCGTGATACTGGGAAGGCTACCCCTGAAAATGGACATGGTGCTGGAAGCCCTGATGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATACTGTACCTGATCCTAGGGACAGTCCCAATTATGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAGTCCCCCCCTGCAGACGAATGA 1110 0.4784 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPSSSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSPSPYRREREGSDPVRDSSRSPYHKERGRTDHGISPSHSPEERGRKSPQNGRGSSQSPRDTGKATPENGHGAGSPDEKGNPSPYNGYGRSPNTVPDPRDSPNYGGPESPMHERYRSQSPPADE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01017 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Spst10g01017 369 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Spst10g01017 369 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 295 - -
Spst10g01017 369 SMART rrm1_1 96 162 IPR000504 GO:0003723
Spst10g01017 369 SMART rrm1_1 3 70 IPR000504 GO:0003723
Spst10g01017 369 SUPERFAMILY RNA-binding domain, RBD 2 167 IPR035979 GO:0003676
Spst10g01017 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Spst10g01017 369 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Spst10g01017 369 MobiDBLite consensus disorder prediction 168 206 - -
Spst10g01017 369 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Spst10g01017 369 MobiDBLite consensus disorder prediction 168 369 - -
Spst10g01017 369 CDD RRM1_AtRSp31_like 2 73 - -
Spst10g01017 369 MobiDBLite consensus disorder prediction 219 294 - -
Spst10g01017 369 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Spst10g01017 369 MobiDBLite consensus disorder prediction 295 309 - -
Spst10g01017 369 Gene3D - 1 85 IPR012677 -
Spst10g01017 369 Gene3D - 86 176 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01017 Spst-Chr10 10855686 10858598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01017 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 8.18e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01017 K12893 - gmx:100796509 632.869