Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01010 ATGGGTGAAGAAGTGAAGGCCATTGTTCCAGAGTCCGTTCTAAAGAAGCGAAAGAGGGAAGAGGAATGGGCTTTGGCGAAGAAGCAAGAGCTCGAAGCTGCGAAGAAGAAGAGAGTTGAGAGCCGCAAACTCATCTACAGCAGAGCCAAGCAGTACGCAGAGGAGTACGATCAGCAGGAGAAGGAATTGATTCGGTCAAAACGTGAGGCTAAACTAAAAGGTGGATTCTATGTGGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATCAATGCCATGGACCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGATCTTCAATGGTGTGTTTCTCAAGGTTAACAAAGCCACCGTGAACATGTTGCACAGAGTTGAACCATATGTCACTTATGGATACCCAAATCTGAAGAACAACTCTATCATTGAGCAGGCTCTGGGAAAATATGGAATCATTTCAGCTGAAGATCTTATCCACGAGATCATCACTGTTGGACCTCACTTTAAGGAGGCTAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGTGGCTTAAAGAAGAAGAGAAACCACTATGTTGAGGGAGGTGATACTGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAATTGA 666 0.4474 MGEEVKAIVPESVLKKRKREEEWALAKKQELEAAKKKRVESRKLIYSRAKQYAEEYDQQEKELIRSKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKNNSIIEQALGKYGIISAEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDTGNRENYINELIRRMN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01010 221 Coils Coil 49 73 - -
Spst10g01010 221 Gene3D - 84 221 IPR036919 -
Spst10g01010 221 PANTHER 60S RIBOSOMAL PROTEIN L7 7 144 IPR039699 -
Spst10g01010 221 CDD Ribosomal_L7_archeal_euk 84 221 IPR035808 -
Spst10g01010 221 FunFam 60S ribosomal protein L7 167 221 - -
Spst10g01010 221 SUPERFAMILY Ribosomal protein L30p/L7e 84 221 IPR036919 -
Spst10g01010 221 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Spst10g01010 221 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Spst10g01010 221 FunFam 60S ribosomal protein L7 84 158 - -
Spst10g01010 221 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01010 Spst-Chr10 10742413 10743920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01010 4 221 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 76.250 1.20e-133 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01010 K02937 - gmx:100305682 379.793