Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01009 ATGGGCTTTCTCCGGCGAATTTTCGGCGCCAAAAAGCCCTCAGACCCCAAATCCACCAAGAAAAGATGGGCCTTCCTCAAGCCCACCGCCCGGAACAAGTCTCTCCCGCCGCCACCGCCACCCTCCACCTTCAACACACACTTTGATCCTTCCACTCCCTTGGGCGCCAACAAGCATGCCATCGCCGTCGCCGCTGCCACCGCCGCCGTCGCAGAGGCCGCTCTGGCTGCCGCACACGCTGCCGCCGAGGTCGTCAGACTCACAAGCGGCGCCTCCGCCGCCGCCACAAGTACCAGCACCAGACCCGCCGCGTCGGTCGCGCGTGTTAGCCAGCTGCGGTTGACGGAACAAACCGCCGCCGTTAAGATACAATCGGCATTCCGTGGTTACTTGGCAAGGAGAGCCTTGAGAGCACTGAAGGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCTGATATGCTGAGGCGCATGCAAACATTGGTGCGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCACATAATACGCCTTCTTTCAAGTCTTCCCTTTCTCACTACCCTGTCCCTGAAGAATACGAGCACCCACCTCGTGCCTTCAGTACAAAATTTGATGGATCTTCTATCCTTAAGAGATGTAGTTCCAATGCCAATTTTAGGAACGTTGACTCAGAAGGAACCCGGTTTGATTCAAACTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGCAGGCAAAGTGGAGATGCTTCATTGAAAACTGGACGCCCTGATGATGATAAAAGTGACAAGATTCTCGAAGTAGATACTTGGAGGCCACATTTCAAGTCTCACCACAGTAGCAACTCCTTTCAGACAGCACATTATTATATGAGTTCTGACTACAATAATGATAACTTTATGGCCCATGAGTCTCCATCAAAACGTTCAGCAAAGGCTCTAAACCAAAGTTTCTCATCAAGGGAGTTGTTGCAGCTAAACTCTTTGAAGTTTCACAAAGGGAAAGAAGAAGCCACTTCAAGAACTGCTGACAATAGTCCACAAGCATTTTCAACCAATTCTAGAAATGGAAGTGGTGCAAGGAGGGGTCCCTTTACACCTACCAGGAGTGAGTGCTCGTGGGGTTTCTTCAGTGGCTACTCGGGTCACCCCAATTACATGGCAAACACTGAATCTTTTCAAGCCAAGGTTAGATCTCAAAGTGCACCTAGACAAAGGCTGGAGTTTGACAGATACGGTTCCACTAGGAGGCCTGTTCATATGGTGGGACCTAATTCAGACCAGGATTCAGATTTAAGGAACAAAGTCTTACCTGCCTCTAACAGTGTCAACAGAATTGGGAGTAGCAATTTAAGGTGA 1386 0.5022 MGFLRRIFGAKKPSDPKSTKKRWAFLKPTARNKSLPPPPPPSTFNTHFDPSTPLGANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGASAAATSTSTRPAASVARVSQLRLTEQTAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSHNTPSFKSSLSHYPVPEEYEHPPRAFSTKFDGSSILKRCSSNANFRNVDSEGTRFDSNWLNRWMELDNKCRQSGDASLKTGRPDDDKSDKILEVDTWRPHFKSHHSSNSFQTAHYYMSSDYNNDNFMAHESPSKRSAKALNQSFSSRELLQLNSLKFHKGKEEATSRTADNSPQAFSTNSRNGSGARRGPFTPTRSECSWGFFSGYSGHPNYMANTESFQAKVRSQSAPRQRLEFDRYGSTRRPVHMVGPNSDQDSDLRNKVLPASNSVNRIGSSNLR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01009 461 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Spst10g01009 461 MobiDBLite consensus disorder prediction 403 461 - -
Spst10g01009 461 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Spst10g01009 461 SMART iq_5 138 159 IPR000048 GO:0005515
Spst10g01009 461 SMART iq_5 115 137 IPR000048 GO:0005515
Spst10g01009 461 Pfam Protein of unknown function (DUF4005) 355 417 IPR025064 -
Spst10g01009 461 PANTHER IQ-DOMAIN 5-RELATED 18 434 - -
Spst10g01009 461 MobiDBLite consensus disorder prediction 1 51 - -
Spst10g01009 461 Gene3D - 113 168 - -
Spst10g01009 461 MobiDBLite consensus disorder prediction 350 372 - -
Spst10g01009 461 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Spst10g01009 461 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Spst10g01009 461 MobiDBLite consensus disorder prediction 343 375 - -
Spst10g01009 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 161 IPR027417 -
Spst10g01009 461 MobiDBLite consensus disorder prediction 436 461 - -
Spst10g01009 461 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01009 Spst-Chr10 10728642 10733032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01009 1 418 IQD Protein Family AT5G62070 45.093 1.26e-62 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01009 - - gmx:100783694 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01009 10 10728642 10733032 Spst10g01009 10 10728642 10733032 ECH