Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01005 ATGCAAAATTCATCTTCCTTCTCCTACTCAACTCAAAGAAAAATGGAGGGCCCCAGTGAGATGGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTCGATGGTGTATCTGGCGATGATCAAGATGGTGGTGATGATCAGCCACAGAGGAAGAAAAGATACCACAGACATACTCCTCACCAAATTCAAGAGCTTGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGCGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACTCAACTGGAACGCCATGAGAATATAATGCTTAGGCAGGAGAACGATAAGCTCAGGGCTGAGAACAGTTTGATGAAGGAAGCCATGTCAAATCCAGTGTGTAACAGCTGTGGTGGCCCGGCGATTCCTGGCCAGATTTCATTTGAGGAGCACCAAATTAGAATTGAGAATGCTAGACTAAAAGATGAGTTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCACTGACCAGTCCCATGGCTCTCCCAACCTCAAATTCTGGTCTGGAACTTGGCATTGGAAGGAATGGGCTTGGTGGTTCAAGCACTCTTGGCACTCCCTTGGCAATGGGACTTGACTTGGGAGATGGAGTGTTGGGCACTCAAACTGCGATGCCTGGGATTAGACCACCATTGGGGTTGATGGGAAATGAAGTTCAGCTCGAGAGATCTATGCTTATAGATCTTGCATTGACTGCCATGGAGGAATTGCTAAAGATGACTCAGGCAGAGAGTCCTCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGTTTAACCATGACGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCACTTGTGGAAACTTTGATGGATGCGAATCGATGGGCAGAGATGTTTCCTTCCATGATTGCTAGAGCTATCAACCTCGATGTTATATCCAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCCGAGGTTCAGTTGCTTTCACCACTAGTCCCCGTTCGTCAAGTGAGATTCCTCCGTTTCTGTAAGCAGCATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATTGATATTGGTCATGATGCTGCTAACGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAAGATATGCCAAATGGTTACTCTAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTTGTACACCAACTTTATCGCCCACTGCTAAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCCACTCTCCAAAGGCAGTGTGAATGTTTGGCTATCCTCATGTCCTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTCGGAGGAGTATGTTGAAATTGGCACAACGTATGACTAGTAACTTCTGTTCCGGGGTTTGTGCTTCTTCTGCTCGCAAGTGGGACAGCCTTCATATGGGGACTCTTGGTGATGACATGAAAGTGATGACTAGGAAAAACGTGGATGACCCTGGTGAGCCTCCAGGGATCGTGCTTAGTGCTGCAACTTCTGTTTGGATGCCAGTGTCACGGCAAAGGGTGTTTGATTTTCTGCGTGATGAACGGTTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAATTGTGTTTCTCTTCTCCGTGCTAATGCTGTTAATGCGAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGACGCGTCGTGCTCAGTGGTGGTATATGCACCAGTTGACGTGCAGTCACTGAACGTGGTGATGAGTGGGGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTTGCCATTCTTCCGGATGGTCATGGCAACAACAGCAGTTGCAATGGGACAATGCAGAAGGGCGGTGGGAGCGACGAGAGCGGGGGAAGCCTTCTGACAGTGGGGTTCCAAATTCTGGTGAACAGTCTGCCGACAGCAAAGCTCACAGTGGAGTCAGTGGACACTGTGAATAACCTCATCTCATGCACCATTCAGAAGATCAAAGGTGCTCTCAGAGTTGCATAA 2298 0.4708 MQNSSSFSYSTQRKMEGPSEMGLIGENFDAGLMGRMRDDEYESRSGSDNFDGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTSPMALPTSNSGLELGIGRNGLGGSSTLGTPLAMGLDLGDGVLGTQTAMPGIRPPLGLMGNEVQLERSMLIDLALTAMEELLKMTQAESPLWIKSLDGEKEVFNHDEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFLRFCKQHAEGVWAVVDVSIDIGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHMGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHGNNSSCNGTMQKGGGSDESGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01005 765 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Spst10g01005 765 MobiDBLite consensus disorder prediction 1 15 - -
Spst10g01005 765 SUPERFAMILY Bet v1-like 270 501 - -
Spst10g01005 765 FunFam Homeobox-leucine zipper protein HDG1 54 141 - -
Spst10g01005 765 SUPERFAMILY Bet v1-like 529 759 - -
Spst10g01005 765 Gene3D - 55 141 - -
Spst10g01005 765 SMART HOX_1 66 129 IPR001356 GO:0003677
Spst10g01005 765 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Spst10g01005 765 CDD homeodomain 67 125 IPR001356 GO:0003677
Spst10g01005 765 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Spst10g01005 765 Pfam START domain 278 501 IPR002913 GO:0008289
Spst10g01005 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 762 IPR042160 -
Spst10g01005 765 SMART START_1 277 501 IPR002913 GO:0008289
Spst10g01005 765 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Spst10g01005 765 MobiDBLite consensus disorder prediction 1 75 - -
Spst10g01005 765 SUPERFAMILY Homeodomain-like 52 125 IPR009057 -
Spst10g01005 765 Coils Coil 119 154 - -
Spst10g01005 765 MobiDBLite consensus disorder prediction 32 46 - -
Spst10g01005 765 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Spst10g01005 765 CDD START_ArGLABRA2_like 272 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01005 Spst-Chr10 10710230 10714498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01005 20 762 Homeobox Transcription Factor Family AT3G61150 62.037 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst10g01005 START 3e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01005 K09338 - gmx:100785102 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01207 2 10674984 10680425 Spst10g01005 10 10710230 10714498 ECH
Spst10g01005 10 10710230 10714498 Spst10g01005 10 10710230 10714498 ECH