Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01003 ATGTCTCTGTCTTCCATGGCTCTTCCCTTCAACCTCGTACACTCCTACCTCGTCCTCTTCTTGTCGTGTTTTCTGCTTGCCACCGCAGACCAAAACAGCGAGAAGCTTTACCTCCTTTCCTTCAAAGAGGGTCTCCAAAACCCTCACGTGCTCCCCTCGTGGCACCCCGCCACCCCGCACTGCAACTGGGTCGGTGTCACGTGCCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCCAACCGGAACCTCAGAGGAGCACTCTCTCCCTCGCTCTTCTCTCTTTCTTTGCTTTCTCTTCTCAACCTACGCGAAAACCAGCTCTCCGGTGAGATTCCCGGCGAGCTCGGTGGGTTGCTTCAGCTTGAAACTCTCCGACTCAGCTCCAACTCGTTTTCAGGGAATGTCCCGCCGGAGGTGGGGCTCTTAACGAGGCTACGCACTCTCGACCTCGCCGGGAATTCGCTCGCCGGAGAAGTGCCTGAGAGTGTTGGGAACTTGACCCGGCTTGAGTTTCTCGACCTCAGCAACAATTTTTTATCTGGTTCCCTTCCGCTTAGTCTCTTCGCTAGAGCGAGGTCTTTGATTTCCGTTGATATCTCGAACAACTCGTTTTCCGGCGTAATACCGCCGGAAATTGGGAACTGGCGGAACATTAGTGCTCTTTACGTGGGGATTAACAAATTGTCTGGGACTTTGCCCAGGGAGATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCTCCTTCCTGTTTCATCGAAGGTCCTTTGCCTGAGGAAATGGCGAAGCTGAAAGCGTTGACCAAGCTTGACCTTTCTTACAACCCCTTGAGATGTTCGATTCCCAAGTTCATTGGGGAGTTGGAGAGTTTAAAAATTTTGGACCTTGTGTTTGCCCAGCTTAATGGGTCGGTGCCAGTCGAGCTTGGGAACTGTAAGAATTTGACGTCTGTGATGCTTTCTTTCAATTCACTCTCTGGGTCTCTGCCTCAGGAGCTTTCTGAGCTTCCCATGTTAACCTTTTCTGCTGAGAAGAATCAGCTTCATGGGCCTTTGCCTTCTTGGCTGGGTAGGTGGAGCAATATTGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTGATTCCTCCTGAGCTTGGGAATTGTTCATTGATGGAGCATCTCAGTTTGAGCAGTAATTTACTGACAGGTCCTATTCCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAATTTTCTCTCTGGTACTATTGAGAGAGTGTTTGTCAAGTGTAAGAACCTTACCCAGTTGGTTTTGATGAATAATCGGATTGTTGGTTCTATACCTGAGTATCTTTCTGAGTTACCCTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGCGGGGAAATACCTTCTGGACTGTGGAACTCATTGACCCTGATGGAATTCTCCGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAGGGCAGTTATGCTGGAGAGGCTTGTACTTAGCAATAATCGCTTGACAGGTACCTTACCTAAGGAAATTGGCAGACTCTCAAATCTTTCAGTTCTTAATCTGAATGGCAATATGCTTGAAGGGAGTATACCAACTGAGCTTGGTGGTTGCACTTCCCTCACGACACTGGACCTTGGAAATAATCAGCTGAACGGGTCAATTCCTGAGAAACTGGTTGAACTGAGCCAATTGCAGTGCCTCGTTCTTTCTCACAACAATCTGTCTGGCTCTATTCCTGCCAAACAGTCTTCATATTTTCGACAGTGTAGCATCCCTGATTTGAGCTTTGTTCAGCATCTTGGTGTGTTTGATCTTTCTCACAATAGATTGTCTGGCCCCATACCCGATGAACTTGGGAGCTGTGTAGTGGTTGTGGATCTCTTAGTTAACAACAACATGCTTTCTGGTAGCATTCCTAAATCACTCTCACGCTTGACGAATCTTACAACTTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCACCAGAGCTTGGACGTGTCCTCAAGCTCCAGGGTTTGTATTTGGGACATAATCAGCTTTCAGGTACCATCCCTCAAAGCTTTGGAAACTTGAGTAATTTGGTTAAGCTGAATTTGACAGGAAATAAGTTGTCTGGTCCAATTCCGGTCAGTTTTGAAAACATGAAGGGGTTGACTCACTTGGACTTGAGCTCTAATGAGCTCAGTGGCAAGCTTCCTTCCTCTCTTTCCGGAGTGCAAAGTCTTGTTGGGATTTACGTGCAAAATAACAGGCTTTCTGGCCAAGTAGGGGATCTCTTCTCAAACTCAATGACATGGAGAATTGAGACAGTCAATTTAAGTGACAATTGCTTCAATGGGAACTTGCCACGATCTTTGGGAAATCTTTCTTACTTGACAAATTTGGATCTTCATAGAAATATGTTGACTGGGGATATTCCTTTAGACCTTGGGGATCTTATGCAACTGGAATATTTTGATGTTTCAGGTAATCAGCTATCTGGAAGGATTCCAGATAAGTTATGCGGCATAGTTAATCTGAATTACCTAGATTTGTCTCGAAACAAGTTGGAAGGGCCGATACCAAATAATGGCATTTGCCAGAACTTACCCAGCGTTAGAGTTGCTGGGAACAAAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCACGATAAAAGCATTGGAAGATCAGTATTGTATAATGCATGGAGGCTTGCTGCAATTGCAGTTACAATTTTACTGCTAACACTAACCATTGCTTTTGTTCTGCATAAATGGATTACCAGGAGGCCAAATAATCCCCAGGAGCGCAAACTAAACAGTTACGTTGATCACAATCTTTATTTCTTGAGCAGCAGCAGATCAAAGGAGCCATTAAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTGGACATCCTTGAAGCAACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACTGTTGCTGTGAAGAAGCTTAGTGAGGCTAAAATGCAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTGGTTGAATTGCTGGGATATTGCTCAATCGCAGATGAGAAACTCCTTGTTTATGAATATATGATTAATGGGAGCTTAGACCTCTGGTTGAGAAATAGAACTGGAGCACTTGAAATCCTAGACTGGAACAAACGGTACAAAATCGCAACTGGTGCAGCTCGAGGACTAGCCTTCCTTCATCATGGTTTCATACCCCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTACTCAATGAAGATTTTGAGCCAAAGGTTGCAGACTTTGGACTGGCAAGACTGATCAGTGCCTGTGAGACGCATGTTACCACTGATATTGCTGGAACATTTGGTTACATTCCACCTGAGTACGGGCAGAGTGGGAGATCCACAACAAGAGGAGATGTCTACAGTTTTGGTGTCATTTTGCTTGAACTTGTGACTGGGAAAGAGCCAACAGGACCAGATTTTAAAGAGATTGAAGGTGGGAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGACAGGCTGCTGATGTTCTTGATCCAACAGTACTTGATGCTGACTCAAAGCAGATGATGCTTCAAATGTTGCAAATTGCTTGTGTGTGCATATCTGATAATCCTGCAAACAGGCCTACCATGTTTCAAGTGCACAAGTTCTTGAAAGGGATGAAGGGAGAGTAG 3816 0.4513 MSLSSMALPFNLVHSYLVLFLSCFLLATADQNSEKLYLLSFKEGLQNPHVLPSWHPATPHCNWVGVTCQLGRVTSLSLPNRNLRGALSPSLFSLSLLSLLNLRENQLSGEIPGELGGLLQLETLRLSSNSFSGNVPPEVGLLTRLRTLDLAGNSLAGEVPESVGNLTRLEFLDLSNNFLSGSLPLSLFARARSLISVDISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPREIGLLSKLEIFYSPSCFIEGPLPEEMAKLKALTKLDLSYNPLRCSIPKFIGELESLKILDLVFAQLNGSVPVELGNCKNLTSVMLSFNSLSGSLPQELSELPMLTFSAEKNQLHGPLPSWLGRWSNIDSLLLSANRFSGVIPPELGNCSLMEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGTIERVFVKCKNLTQLVLMNNRIVGSIPEYLSELPLMVLDLDSNNFSGEIPSGLWNSLTLMEFSAANNRLEGSLPVEIGRAVMLERLVLSNNRLTGTLPKEIGRLSNLSVLNLNGNMLEGSIPTELGGCTSLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGSIPAKQSSYFRQCSIPDLSFVQHLGVFDLSHNRLSGPIPDELGSCVVVVDLLVNNNMLSGSIPKSLSRLTNLTTLDLSGNLLSGSIPPELGRVLKLQGLYLGHNQLSGTIPQSFGNLSNLVKLNLTGNKLSGPIPVSFENMKGLTHLDLSSNELSGKLPSSLSGVQSLVGIYVQNNRLSGQVGDLFSNSMTWRIETVNLSDNCFNGNLPRSLGNLSYLTNLDLHRNMLTGDIPLDLGDLMQLEYFDVSGNQLSGRIPDKLCGIVNLNYLDLSRNKLEGPIPNNGICQNLPSVRVAGNKNLCGQMLGINCHDKSIGRSVLYNAWRLAAIAVTILLLTLTIAFVLHKWITRRPNNPQERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKMQGHREFMAEMETLGKVKHQNLVELLGYCSIADEKLLVYEYMINGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHVTTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCISDNPANRPTMFQVHKFLKGMKGE 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01003 1271 Gene3D Transferase(Phosphotransferase) domain 1 1069 1270 - -
Spst10g01003 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 605 901 - -
Spst10g01003 1271 PRINTS Leucine-rich repeat signature 851 864 - -
Spst10g01003 1271 PRINTS Leucine-rich repeat signature 732 745 - -
Spst10g01003 1271 ProSiteProfiles Leucine-rich repeat profile. 659 681 IPR001611 GO:0005515
Spst10g01003 1271 FunFam serine/threonine-protein kinase BRI1-like 2 954 1068 - -
Spst10g01003 1271 SUPERFAMILY L domain-like 33 279 - -
Spst10g01003 1271 FunFam Leucine-rich repeat receptor protein kinase EMS1 339 598 - -
Spst10g01003 1271 Gene3D Ribonuclease Inhibitor 340 598 IPR032675 -
Spst10g01003 1271 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 641 1266 - -
Spst10g01003 1271 Gene3D Phosphorylase Kinase; domain 1 956 1068 - -
Spst10g01003 1271 SMART LRR_typ_2 525 549 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 263 287 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 550 573 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 705 728 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 451 477 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 142 165 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 729 752 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 609 633 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 657 681 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 94 118 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 166 190 IPR003591 -
Spst10g01003 1271 SMART LRR_typ_2 851 876 IPR003591 -
Spst10g01003 1271 Gene3D Ribonuclease Inhibitor 599 900 IPR032675 -
Spst10g01003 1271 Pfam Leucine Rich Repeat 683 705 IPR001611 GO:0005515
Spst10g01003 1271 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 31 184 - -
Spst10g01003 1271 FunFam serine/threonine-protein kinase BRI1-like 2 1069 1271 - -
Spst10g01003 1271 Pfam Protein tyrosine and serine/threonine kinase 996 1265 IPR001245 GO:0004672|GO:0006468
Spst10g01003 1271 FunFam leucine-rich repeat receptor protein kinase EMS1 189 338 - -
Spst10g01003 1271 SUPERFAMILY L domain-like 605 890 - -
Spst10g01003 1271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1115 1127 IPR008271 GO:0004672|GO:0006468
Spst10g01003 1271 SMART serkin_6 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01003 1271 SMART LRR_sd22_2 681 707 - -
Spst10g01003 1271 SMART LRR_sd22_2 827 853 - -
Spst10g01003 1271 SMART LRR_sd22_2 166 187 - -
Spst10g01003 1271 SMART LRR_sd22_2 430 453 - -
Spst10g01003 1271 SMART LRR_sd22_2 657 672 - -
Spst10g01003 1271 SMART LRR_sd22_2 263 289 - -
Spst10g01003 1271 SMART LRR_sd22_2 729 755 - -
Spst10g01003 1271 SMART LRR_sd22_2 142 165 - -
Spst10g01003 1271 SMART LRR_sd22_2 549 575 - -
Spst10g01003 1271 ProSiteProfiles Protein kinase domain profile. 993 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g01003 1271 Gene3D Ribonuclease Inhibitor 188 279 IPR032675 -
Spst10g01003 1271 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Spst10g01003 1271 Gene3D Ribonuclease Inhibitor 280 339 IPR032675 -
Spst10g01003 1271 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Spst10g01003 1271 Pfam Leucine rich repeat 724 766 IPR001611 GO:0005515
Spst10g01003 1271 SUPERFAMILY Protein kinase-like (PK-like) 974 1265 IPR011009 -
Spst10g01003 1271 ProSitePatterns Protein kinases ATP-binding region signature. 999 1022 IPR017441 GO:0005524
Spst10g01003 1271 SUPERFAMILY RNI-like 344 588 - -
Spst10g01003 1271 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01003 Spst-Chr10 10661348 10665163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01003 29 1266 Receptor kinase-like Gene Family AT5G07280 59.423 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Spst10g01003 PK_Tyr_Ser-Thr 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01003 - - vum:124838832 2259.18