Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01001 ATGGGAAGGAAGTTTCGCGAGGAAAAAGAGAACTATCACCACACAGAAAACCCTTCCTGCGCCATTCCCACCATGCCTCCGCCGTTGGAACACAACTCCGATTCCACCAGCGCTGAGTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTACCAGCTCGTCGACGATCACACCATTGATCATGTCATATCCTGGAACGATTCTGGATCATCCTTCATTGTTTGGAACACTACCGTTTTCGCCAGGGATTTACTTCCTAAATATTTCAAGCATAACAACTTTTCCAGCTTCGTTCGCCAACTCAATACTTATGGATTCAGAAAAGTTGTCCCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGAAGAGGCCAGAAACGGCTTCTGTGCGAAATTCAGCGGCGGAAGATCCTCTCCGCATCGCCACCGGCCGGAGCAACTGCGACTGTGGCGGTTCCGTCGCCGCTGCCTCTATCCACGATTCCGACGGCGAAGCCCATCGTTTCGCCGTCGAACTCAACGGAGGAGCAGGTGATCTCGTCGAACTCGTCGCCGAGGGTGCCGGCGGAGCTGTTGGACGAGAACGAGCGGCTGAGAAAGGAGAACATCCTGTTGACAAAGGAATTGGAAGACATGAGATCGCTCTGCAACAACATATTTAATCTCATGTCTAATTACGTAAGCACTCGAGCGGACTGTGGTACCGCAGCGGCGGCGGCCAAGACGCTTGGTTTGATGTCATCCAACCGGTGCTCCGGGGATGACGCGGTGGATGAGATGAATACAAAGTTGTTTGGGGTGGCTATTGGAATGAAGCGAGGGAGAGAAGAAGAATTTGGAGCGGATACGGTTTTGAGTCTGCATCGCGCGGACGTGAAACCTGAACCGTTAGATTTCATAAGACATGGAGAAAATGTAAATACTTCGTGGCTAAATCACTATCGTAGGGCAAATGAGAGAGTGTGCAATTGA 978 0.5112 MGRKFREEKENYHHTENPSCAIPTMPPPLEHNSDSTSAESQRSIPTPFLTKTYQLVDDHTIDHVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGQKRLLCEIQRRKILSASPPAGATATVAVPSPLPLSTIPTAKPIVSPSNSTEEQVISSNSSPRVPAELLDENERLRKENILLTKELEDMRSLCNNIFNLMSNYVSTRADCGTAAAAAKTLGLMSSNRCSGDDAVDEMNTKLFGVAIGMKRGREEEFGADTVLSLHRADVKPEPLDFIRHGENVNTSWLNHYRRANERVCN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01001 325 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst10g01001 325 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst10g01001 325 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst10g01001 325 MobiDBLite consensus disorder prediction 1 15 - -
Spst10g01001 325 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst10g01001 325 Gene3D - 40 138 IPR036388 -
Spst10g01001 325 MobiDBLite consensus disorder prediction 29 43 - -
Spst10g01001 325 MobiDBLite consensus disorder prediction 1 43 - -
Spst10g01001 325 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst10g01001 325 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst10g01001 325 Coils Coil 197 217 - -
Spst10g01001 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 233 IPR027725 -
Spst10g01001 325 FunFam Heat stress transcription factor B-4 40 138 - -
Spst10g01001 325 SUPERFAMILY "Winged helix" DNA-binding domain 45 137 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01001 Spst-Chr10 10657018 10658170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g01001 38 325 HSF AT5G62020 48.875 3.88e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst10g01001 HSF_DNA-bind 2.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g01001 K09419 - gmx:100780987 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01001 10 10657018 10658170 Spst10g01001 10 10657018 10658170 ECH
Spst4g03145 4 70915647 70916823 Spst10g01001 10 10657018 10658170 PCT