Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00990 ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCTGAAGAAGACAACAAGCTCAGAAACCACATCCTTAAACATGGTCATGGTTGCTGGAGTTCTGTCCCCATTAAGGCAGGTCTGCAGAGGAATGGAAAGAGTTGCAGACTAAGATGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAACAAACAGGAAGAAGAAACAATCCTGACCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGACAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTAAGGAAATGGATTCTCATAAGCAAATCAAGTATGCTAGTTCAAGCTCAGATACCATGGACTCTTCAAATTCTCTCCAAAAACTTGCAACTCAAGCCACACAGAATTGTAACTTCACCAAAGAGGCTTGTCAAAGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCATTGGACCAAGTAAACTCTGCAAATTCAGTTGACTCTTTTGGTTTGAGAAATGGATTTGATCAAAATTCAACTCTTCAAGGAGCTCCAATTCATGATATCTCAGAGGTACCCTTCGGTGGAGGGTACCATAGATGTGTAGCTAACATTTCATCCCCTGAGATGTTCAATTCAGAGCTGAAGTATGCAAATCAAATGGTGGAAAATGGTTTCATCCATTGCATGCCTGGAGTTGACTTAATTAGCAACTTCAGCCTGAGCAATGATGCAATATTGTACATATGA 813 0.4108 MGCQPLEKGKPKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFNKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKAKEMDSHKQIKYASSSSDTMDSSNSLQKLATQATQNCNFTKEACQSSLPKLLFAEWLSLDQVNSANSVDSFGLRNGFDQNSTLQGAPIHDISEVPFGGGYHRCVANISSPEMFNSELKYANQMVENGFIHCMPGVDLISNFSLSNDAILYI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00990 270 SMART sant 67 115 IPR001005 -
Spst10g00990 270 SMART sant 14 64 IPR001005 -
Spst10g00990 270 CDD SANT 18 62 IPR001005 -
Spst10g00990 270 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Spst10g00990 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Spst10g00990 270 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Spst10g00990 270 MobiDBLite consensus disorder prediction 1 21 - -
Spst10g00990 270 Gene3D - 15 67 - -
Spst10g00990 270 MobiDBLite consensus disorder prediction 7 21 - -
Spst10g00990 270 FunFam MYB transcription factor 12 68 - -
Spst10g00990 270 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 215 224 IPR017972 GO:0005506|GO:0016705
Spst10g00990 270 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Spst10g00990 270 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Spst10g00990 270 CDD SANT 70 113 IPR001005 -
Spst10g00990 270 FunFam MYB transcription factor 70 141 - -
Spst10g00990 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Spst10g00990 270 PANTHER MYB DOMAIN PROTEIN 55 8 180 - -
Spst10g00990 270 Gene3D - 69 147 - -
Spst10g00990 270 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00990 Spst-Chr10 10575687 10577999 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00990 8 176 MYB Transcription Factor Family AT3G48920 58.721 5.60e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g00990 Myb_DNA-binding 8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00990 K09422 - gmx:778167 497.664