Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00966 ATGCAACCCCCAACAACACTCACCGGATTGCTCCACCGGGTCGCCGGAACGTTCCCTTCCCACCGCGCAGTCTCCGTCTCAGGCAAATTCAACCTCACTCACTCCCGCCTCCACCACCTCGTCGAACGCGCCGCCGCACGCCTTCTCTCTGCCGGCATCAAACCCGGCGATGTCGTCGCACTCACCTTCCCCAATACCGTCGAGTTTATCATCACGTTTCTGGCCATCATTCGAGCGCGAGCCACGGCGGCGCCGTTGAACGCGGCTTACACCGCGGAAGAGTTCGAGTTTTATTTATCTGACTCAGAGTCAAAACTGTTAATAACCTCGAAAGAAGGGAACGAACCTGCCCAGGCCGCGGCTTCCAAGCTTGGCATTCCGGTATCAACGGCTTCCCTCGAGGAAGCTGAAGCCGAAGAGCTCAGTCTCTCTCTGAGTTACACCGACTCACCGATCGACTCGGTTTCCGAGCTCACCAACGACGCGTCCGATGTGGCCCTGTTTCTTCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCAAAACTTGGCCTCATCGGTGGAGAACATCAAGTCCGTGTACAAACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCCTTGTTCCACGTCCACGGGTTGCTCGCCGCGTTGCTGAGTTCGCTCGCCGCAGGAGCCGCCGTGGCGCTCCCAGCGGCGGGGAGGTTCTCCGCCTCCTCGTTTTGGAGCGACATGTTGACCTACAACGCCACGTGGTACACCGCGGTTCCCACGGTGCACCAAATCGTGTTGGAACGTCACTTGAAAAACCCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGTGCCTCGCTTGCACCGGTTATATTGGAGCGGTTGGAGGAGGCGTTTGGGGCACCGGTTTTGGAGGCCTATGCTATGACGGAAGCGTCGCATTTGATGTCTACGAACCCATTACCCGAAGATGGGCCTCATCGAGCCGGGTCAGTTGGAAAGCCCGTGGGCCAGGAAATGGCGATTTTAGATGAGAAGGGTGAGATTCTAAAGAATGAAGTTAAAGGTGAGGTTTGTATTAGAGGACACAACGTGACCAAAGGGTATAAAAATAACCCTGATGCGAATATTTCTGCGTTTCAATACGGGTGGTTCCACACAGGTGATATCGGGTTTTTTGATTCGGATGGATATTTGCACCTCGTGGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCTGTCCTTCTATCTCATCCAGACATCGCCCAAGCAGTTGCATTCGGAGTTCCAGATGATAAGTATGGCGAAGAGATAAATTGTGCGATCATCCCAAAAGAAGGATCAAACATTGATGAGGAAGAGGTGCAGAGATTTAGCAAGAAGAACCTTGCAAGCTTCAAAGTCCCTAAAAAGGTCTTCATCACTGATTCTTTGCCCAAGACCGCCACTGGCAAGATTCTAAGGCGTCTTGCTGCAGAACACTTCGTTTCTCAAACTTGA 1548 0.5375 MQPPTTLTGLLHRVAGTFPSHRAVSVSGKFNLTHSRLHHLVERAAARLLSAGIKPGDVVALTFPNTVEFIITFLAIIRARATAAPLNAAYTAEEFEFYLSDSESKLLITSKEGNEPAQAAASKLGIPVSTASLEEAEAEELSLSLSYTDSPIDSVSELTNDASDVALFLHTSGTTSRPKGVPLTQQNLASSVENIKSVYKLTESDSTVIVLPLFHVHGLLAALLSSLAAGAAVALPAAGRFSASSFWSDMLTYNATWYTAVPTVHQIVLERHLKNPEPVYPKLRFIRSCSASLAPVILERLEEAFGAPVLEAYAMTEASHLMSTNPLPEDGPHRAGSVGKPVGQEMAILDEKGEILKNEVKGEVCIRGHNVTKGYKNNPDANISAFQYGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEEEVQRFSKKNLASFKVPKKVFITDSLPKTATGKILRRLAAEHFVSQT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00966 515 Pfam AMP-binding enzyme 12 417 IPR000873 -
Spst10g00966 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
Spst10g00966 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
Spst10g00966 515 PANTHER ACYL-COA SYNTHETASE 6 511 - -
Spst10g00966 515 FunFam Peroxisomal-coenzyme A synthetase 6 410 - -
Spst10g00966 515 Gene3D - 6 410 IPR042099 -
Spst10g00966 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
Spst10g00966 515 Gene3D - 411 513 IPR045851 -
Spst10g00966 515 FunFam 4-coumarate--CoA ligase 2 413 514 - -
Spst10g00966 515 SUPERFAMILY Acetyl-CoA synthetase-like 4 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00966 Spst-Chr10 10370238 10373624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00966 3 514 Monolignol Biosynthesis Gene Families AT4G05160 30.798 1.62e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00966 K22133 - gmx:100783685 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03196 4 71563816 71567397 Spst10g00966 10 10370238 10373624 ECH
Spst10g00966 10 10370238 10373624 Spst10g00966 10 10370238 10373624 ECH
Spst4g03196 4 71563816 71567397 Spst10g00966 10 10370238 10373624 PCT