Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00954 ATGTCAGAATCTGAGGAAGAAAATCCAGACTATCTTCCAAGGTCAAAGCCTGCAGAGGAAGGTAGCTGCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACCTGGCCTTTGTCTCCAACCCCACGTCACCTCTTCTGTTCTCCTCCAACTCTGACCAGCCTTATTCTCCTCTATGGGCTTTCTCTGATGGAGAAGACCCCAAACTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATAGCTGAAAAGCCAGTGGAAAATGATGACAACAAACAGCTTTTGGCACCACTTGCGCCTATGCCACTAGTGGAAAATGTGGACGGATATTGTGTGATAAAGGAAAGGATGACACAAGCGCTTCGTTACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTACGTGCTTACAACTCTAGGTCAACCATTTGTTCTTGATCCACATAGCAATGGACTCCATCAGTATAGAACGGTCTCTCTGATGTACGTGTTTTCTGTGGACGGGGAGAATGATGGATGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTGCCGGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACACTACAATGTTCGTGGATCTTTGGCTTTGCCCGTTTTTGAGCCTGCATTGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATCAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTAGAGACAGTAAACTTGAGGAGTTCCGAAATTTTGGATCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATATTGACAGTGATGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGATTCCTTGTAAGCATCGGAGTGTCTTGGCCCAAGGTGGTGGAGTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATTGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCAGGGAGGGCTTTTTTGTCCCACGGCATGTCCTTCTGTTCAAACATTGCCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAAGTGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCATGAACAAAAGACTTTGTTGGGATCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAATATTGCTTCTGGTGTTGAACTTAAGGATGGTTCAATTGAAATAATTGAAGCAACAATTGAAAGAATTCATACGAGGCTTGAATCTATTCCAATTGCCCCATCTATTATATCACCACCTAGACCTGGTACTTCACCAAATATGGAGGAGGAAGTTCCACGGGATCCATCAGAACAACACATATTGATGTACTGTAATGGTATCAATGATGGAGCAAATCTCAGTGGTGAAGCAGGTGGAAAGATTGATCATACGACCACTTCAGGGACCAAAAACATTAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATAAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCGAAGAGCCTTGGTGTTTGCCCAACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCTCGTTGGCCATCTAGAAAGATCAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAGGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTCGGTTCCCTTCCTAAGTCATCTACTCCAAACAAGTTCAGCCAGCCAGTCTCAATAGGCATTAGACCATCAGAGCCTCAGATGGATGTGAATGAATTGATTGCCTCCAAAGAATTAGAAACAAACAGACAGGCTGGAATGGAAGATCAATTGCTTGGAGGAAGGATACGGAATCTTGAGAGAGTTAAAGGAGTTTCTACTCAGGAGGTTTCAACAGAACCGAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGACAGCACAAATCCTACCTCTCACGGTTCATGGCATGACAGTCCCCCAAATGAAAGTTCACCTGTGAAAGATATATTCATTACCAACAACCATGATCAATGTACTTTGCTAAGGAGATCACCAGAGTCAACACTGCAGCCAACCATTAATATGCCTAACCGGCTTACTGCTTACCCTATGCCTGACTTAGTGGCTGCAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCCGGAAGTTCTAAAGACTTGAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTAGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCTTTAGATTTGTCTCCCAAGCAAAGCATGGGTACTCCTAATAAATCAGTGACACCTTTTGCAGCTATGAAAGAAATGAAGACTGTGACTATCAAGGCAACATACAGAGAAAATATCATTCGATTTCGGGTGTCATTGACATGTGGCATTGTGGAGCTTAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATTTCAAGTACCTTGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCTGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2958 0.4344 MSESEEENPDYLPRSKPAEEGSCTMDFDLDLETSWPLDHLAFVSNPTSPLLFSSNSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFPCDSNSIAEKPVENDDNKQLLAPLAPMPLVENVDGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTLGQPFVLDPHSNGLHQYRTVSLMYVFSVDGENDGCLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVMCETHNLPLAQTWIPCKHRSVLAQGGGVKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSHGMSFCSNIAQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGSDDYVLEFFLPPRVTDFHEQKTLLGSILATMKQHFQSLNIASGVELKDGSIEIIEATIERIHTRLESIPIAPSIISPPRPGTSPNMEEEVPRDPSEQHILMYCNGINDGANLSGEAGGKIDHTTTSGTKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPIAVGSLPKSSTPNKFSQPVSIGIRPSEPQMDVNELIASKELETNRQAGMEDQLLGGRIRNLERVKGVSTQEVSTEPKRTRTGSGSSEDSTNPTSHGSWHDSPPNESSPVKDIFITNNHDQCTLLRRSPESTLQPTINMPNRLTAYPMPDLVAAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKSVTPFAAMKEMKTVTIKATYRENIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDFKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00954 985 CDD PB1_NLP 891 971 IPR034891 -
Spst10g00954 985 PANTHER PROTEIN NLP8 56 984 IPR045012 GO:0003700
Spst10g00954 985 Gene3D - 887 971 - -
Spst10g00954 985 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Spst10g00954 985 MobiDBLite consensus disorder prediction 672 695 - -
Spst10g00954 985 Pfam RWP-RK domain 584 632 IPR003035 -
Spst10g00954 985 MobiDBLite consensus disorder prediction 672 687 - -
Spst10g00954 985 MobiDBLite consensus disorder prediction 728 775 - -
Spst10g00954 985 ProSiteProfiles PB1 domain profile. 890 972 IPR000270 GO:0005515
Spst10g00954 985 SUPERFAMILY CAD & PB1 domains 885 975 - -
Spst10g00954 985 MobiDBLite consensus disorder prediction 730 775 - -
Spst10g00954 985 MobiDBLite consensus disorder prediction 1 23 - -
Spst10g00954 985 SMART PB1_new 890 972 IPR000270 GO:0005515
Spst10g00954 985 MobiDBLite consensus disorder prediction 554 578 - -
Spst10g00954 985 Pfam PB1 domain 890 971 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00954 Spst-Chr10 10264652 10268904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00954 259 985 NLP Transcription Factor Family AT4G24020 52.838 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst10g00954 PB1 4.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00954 - - gmx:100786118 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03201 4 71685707 71691665 Spst10g00954 10 10264652 10268904 PCT