Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00949 ATGGGTAGCGTCGTGGTGGAAGACGCGGATACTGACACAGTGTATGTGGCGGTGGGAAGGAACGCGGAGAAGACGCAACAACTGCTGCATTGGGCGGTTAATAATTTATCTGGCAAGAATGTTTGCCTTCTTCATATTCACCAACCTCACGCCCTCAATTCGTTATCAGACAGAAATCTTTCTGTGTATGAACCAAAAGACCTTCCAATCCAGGCATTTCAGGAGCAAGGAAATCAAATGGTGGACGAACTTCTAGACCAATACATTCTCACTCTGGTCCCGGCAGGAGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCGCAAAAGCTATTGCTCAACACAATATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGAATATAACATGGGCAAACTGGCTAAGCAAGATTTGGACAAAGCTAATTTTGTACGTGAACAAGCATTGCTATCCTGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGATATTTGGTGTACTGCACGAGTGTCCTTGTCAATATCTTTGGAGCAGGTTATGATATGGATGGATGGGCTGCAAAGAAACAGCATATTCATTCAATTTGGTTATATAGTAAGCATACTTCTGACATAGAGACTAGACCTGCATTGTTGGCGGTCAATTCAAATACAGAAGCCAAACAATCAGAAAAGACTAAATCAGAATCGATTCCTGATGCATTGAAATATTTAGATTCGGATGATATGAAAGAAATCCAAAGTATCAGTTCCCACCGTTCCTTAAATTCAAAATGGTCCTTTAATAATGTCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCGTTTGAAAGCCAGTGTTCTAAGGAAATAAAAGGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGACGAATCAAGAAGTACAGAAAATCAAGAATGAGCAAGATGAAATACTTGAAGAATTGCAAATGATCAAAGACCAAAATTCAGTACTCATGAACCAAATTTCTGAGTCCCAGTGTACGGAATCAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGACAGGATTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAAAATTTGATGAAGCAGATACTTCCTTCTCTTATCAGGTAGAATTCCCTTCATTTTCTTTCGTGGAGATCAACGAGGCAACTCATGATTTTGATCCATCTTGGAAGATTGGTGAGGGAAGGTATGGAAGTGTTTACAAGGGATTGCTTCGCAACATGCATGTTGCTATAAAAATGTTACCCTCTTATGGTTGTCAAAGTCTATCAGAGTTCCAACATCAGGTAGAGGTCTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGACTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAATCACCTTGCCCGCAAAGAAAAAAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACAAACATATGCTCCGCTCTAATCTTCCTTCATTCCAGCGAGCCTTGTACTATCCATGGGAATTTGAAACCTAGTAAGGTCCTCCTTGATGCTAACTATGTTGCCAAACTGAGTGACTTGGGCATCCCTAGTTTAGTCCGGCAAAGTTTTGATTCAGCTGATGCAAGCACAATATGTAATAACCCAAATGAACGTTTGGCATATGTGGATCCAGAGTATTTTGTCACTGGCAAGTTTACACCAGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAACTTCTAACTGGAAGACCACTTGTGGGGTTAGTTAGGGATATGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACTTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGACAAGAGTTGGTTGAACAGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATTGACACATCCCCATATTTTATTTCTAAGAAGCTTCATCGTGTTCCTTCCCATTTTGTCTGTCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGCAGAGGCAATCAGAGGGTGGTTAAATAGTGGCCACGACACTTCTCCCATGACAAACCTCAAGCTTGATCACTTGGATTTGGTACCTAACTATGCCCTACATAATGCAATTCTGGAGTGGCAGCAACAACAGTAA 2319 0.4101 MGSVVVEDADTDTVYVAVGRNAEKTQQLLHWAVNNLSGKNVCLLHIHQPHALNSLSDRNLSVYEPKDLPIQAFQEQGNQMVDELLDQYILTLVPAGVRACKLLIEMDDIEKGIAKAIAQHNIRWLVVGAAADEYNMGKLAKQDLDKANFVREQALLSCNIWFICKGNLICTRYLVYCTSVLVNIFGAGYDMDGWAAKKQHIHSIWLYSKHTSDIETRPALLAVNSNTEAKQSEKTKSESIPDALKYLDSDDMKEIQSISSHRSLNSKWSFNNVMDRSKLADLMFHEDEAFESQCSKEIKGRKEVEEQLARTNQEVQKIKNEQDEILEELQMIKDQNSVLMNQISESQCTESEFEEKIISAVDLLISFREKRDRIRIEHANAVREVQVLRKFDEADTSFSYQVEFPSFSFVEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGCQSLSEFQHQVEVLSRVRHPNLLTLIGSCADSRSLVYEYLNNGSLENHLARKEKNPLPWQIRISIATNICSALIFLHSSEPCTIHGNLKPSKVLLDANYVAKLSDLGIPSLVRQSFDSADASTICNNPNERLAYVDPEYFVTGKFTPESDVYSFGVILLQLLTGRPLVGLVRDMKCALEKENLKAVLDFSAGEWPLYQTEQLAYLALRCCDKSWLNRPDLVSEIWSVLEPFKATCIDTSPYFISKKLHRVPSHFVCPIVQEVMEDPYIAADGFTYEAEAIRGWLNSGHDTSPMTNLKLDHLDLVPNYALHNAILEWQQQQ 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00949 772 Coils Coil 301 335 - -
Spst10g00949 772 CDD RING-Ubox_WDSUB1-like 703 758 - -
Spst10g00949 772 Pfam U-box domain 702 771 IPR003613 GO:0004842|GO:0016567
Spst10g00949 772 Gene3D HUPs 5 131 IPR014729 -
Spst10g00949 772 Gene3D Transferase(Phosphotransferase) domain 1 492 687 - -
Spst10g00949 772 PANTHER OS02G0152300 PROTEIN 14 767 - -
Spst10g00949 772 ProSiteProfiles U-box domain profile. 701 772 IPR003613 GO:0004842|GO:0016567
Spst10g00949 772 Pfam Protein tyrosine and serine/threonine kinase 424 672 IPR001245 GO:0004672|GO:0006468
Spst10g00949 772 SUPERFAMILY RING/U-box 697 771 - -
Spst10g00949 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 772 IPR013083 -
Spst10g00949 772 ProSiteProfiles Protein kinase domain profile. 419 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00949 772 CDD STK_N 13 166 - -
Spst10g00949 772 SUPERFAMILY Protein kinase-like (PK-like) 395 680 IPR011009 -
Spst10g00949 772 ProSitePatterns Protein kinases ATP-binding region signature. 425 446 IPR017441 GO:0005524
Spst10g00949 772 SMART Ubox_2 705 768 IPR003613 GO:0004842|GO:0016567
Spst10g00949 772 Gene3D Phosphorylase Kinase; domain 1 390 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00949 Spst-Chr10 10220006 10229085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00949 12 772 U-box Gene Family AT2G45910 41.154 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Spst10g00949 PK_Tyr_Ser-Thr 3.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00949 - - gmx:100787938 1264.21