Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00948 ATGGAGTCACCGAACAAGGTTGCAATGCCAGTTGCAAAACTCCCGGCCTCTGGCACAACCGGTTTCACAAAAACAGATGACGGAAATGATTCTTTAGATACAATATTCAGGCAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTCCTAGGGCTGGTGACAGCCCGGTGCAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGCGAAGGTTCAGTTACAAAAGTGTAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGACATATACGCGTTCAACACCGATTGAAAAAGCTTGATAAGGATTCTAAAAAGAATAGGGAACTTTTAGGGGCATATTGGGATAAGCTCTCCGTAGAAGAGGCAAAGGAAGTTGTGTCATTCAAGAATGTGATGCTGGAGGAAATTTCAGGGACTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTACCTGAGGGCTGGCTCTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAATTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCCGGAAAGATTGGTCTTGAACAAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGCTTGTTTGTTGTTTGATTCATTCAATGGCATATTGTTGTATGGTGTGAATGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAAAAACTGCTGGTGGAGGAAGAGGAAGCTGCTCAGAAAAGAAAAGCTGATATTTTAGAGAAGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACAACTCGAAGATGACACAGAAATTAAAGGAAACATAAGCAGCGCAGGGGAAGACGTATCACCAGCAGAAGCATGTGATTTTGATGCACATAATCCTGATATATTTGCGGATCATTCTCCTCCTGTAACTTCTTATTACCTTGACAACAATGAAGTTATAGAAGGGGATACACTGTCAGGGTATGATTGTGACACTGATCAGTATATAGAGAGACAGACATTACGAGGACAAAATCGCCGGGGCACGATGCCTGCCAGATGGCAAGGGCTACCAAAATCACAATGGGCTAGAACCAATGGTTTGAATGCAGGCCAGAATTCTCCACTGTCAAAACTTGGAGTGATTCCAAAGCATAGAATCAGCCATGATCTTAGGGTAGCTCCCATAGTTAATAATAGTAATAAAGTTTGGAGTCGAAAACCTAAAGCAGAAACTAATGCTTTGGTTCTAAAAGCCAAACTGCAGAAAGAACCAGACAAAGATAGGAATCAAGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGCAATTGCTGCTGTCATTCCGGAGGTAATTTTGTGGCACCCCAGCGGGACTGCTTGGCAGAGGATGTAGCCAAGCAGAATACTGCTCAGGAAAAACCAGTGAAACACGATTCGTCCCAGGGAAGCATCAGTCGGTTAACAGTTAAGCTTTGGAGGCCTAGGCCTGTTAGCCAGCATGGAACTAAAGATCCCTTTCCACTCCAAATCCAAAATGGTGGGACTGAAGCTGATCTTATTAGTGGGAAATTTGACGAGAAATTATCAGTTCAAAATAGTTTAAGGTTGTGTAGTGTAGAAGACAATGATATTGATTTTGGGGACAAATTTTCCCATGACGTGGCAAAAGTAGATTCAGACAGCTTACGACTATCCAGCCATGCTGCAAAATCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCCTCAAATCATGTAAAATTGGTCGTCACACCTCATTTAGAGTCTCGCGAAAGACAGCTGGAACAAGAGCCTGAATTAGAAGCAAATCAATATGCGAACTCGGACAGATTTGACATTGTTGCAAGTCCAGAAAACCAATTGCCTGCATCGTCTGGAATAGCAAAACCTAAGTCCAAAACAAAGTCTGAGAAAGGAACGAAGATAAAGTACATTCCCAAACAGAGAGCTCCTTCTTGA 2127 0.4184 MESPNKVAMPVAKLPASGTTGFTKTDDGNDSLDTIFRQAIGKEPLLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPAKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKKNRELLGAYWDKLSVEEAKEVVSFKNVMLEEISGTSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSNFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEQKNLVACTSFLLEQKLACLLFDSFNGILLYGVNAWLADKDAEALRCQKLLVEEEEAAQKRKADILEKKRQKKLRQKEHKAREQLEDDTEIKGNISSAGEDVSPAEACDFDAHNPDIFADHSPPVTSYYLDNNEVIEGDTLSGYDCDTDQYIERQTLRGQNRRGTMPARWQGLPKSQWARTNGLNAGQNSPLSKLGVIPKHRISHDLRVAPIVNNSNKVWSRKPKAETNALVLKAKLQKEPDKDRNQEVLIGSVSVSLGNCCCHSGGNFVAPQRDCLAEDVAKQNTAQEKPVKHDSSQGSISRLTVKLWRPRPVSQHGTKDPFPLQIQNGGTEADLISGKFDEKLSVQNSLRLCSVEDNDIDFGDKFSHDVAKVDSDSLRLSSHAAKSFLAQRWKEAISSNHVKLVVTPHLESRERQLEQEPELEANQYANSDRFDIVASPENQLPASSGIAKPKSKTKSEKGTKIKYIPKQRAPS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00948 708 Coils Coil 300 320 - -
Spst10g00948 708 MobiDBLite consensus disorder prediction 303 328 - -
Spst10g00948 708 MobiDBLite consensus disorder prediction 665 686 - -
Spst10g00948 708 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 112 IPR013087 -
Spst10g00948 708 MobiDBLite consensus disorder prediction 661 708 - -
Spst10g00948 708 ProSitePatterns Zinc finger C2H2 type domain signature. 86 107 IPR013087 -
Spst10g00948 708 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 9 707 - -
Spst10g00948 708 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00948 Spst-Chr10 10211083 10216147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00948 27 707 C2H2 Transcription Factor Family AT4G25610 41.631 6.92e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00948 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00948 - - gmx:100799153 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00948 10 10211083 10216147 Spst10g00948 10 10211083 10216147 ECH
Spst4g03206 4 71732406 71750441 Spst10g00948 10 10211083 10216147 PCT