Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00926 ATGGTGTCCAAAAACCCCAACCCCTCTGAGGCTTTCTACTTGGACCCTTCTGGCATGTCGCTCCCAGGAATCCTCCCCTTCACCGCCGCTGCGGATTCGCTTGAAGACCCTGCTAAAAAGACTCGCAAACCTTACACTATCACCAAGTCTAGGGAGAGCTGGACAGAACCCGAACACGACAAGTTCCTCGAAGCTCTTCAATTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATACGTAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATATCCTCAAAAAGCTTCAAAAAATGTTCCAGTGTTGTCACAAGTATCAGGCTTATTTCAATCATCATCCGCTTTGCTTGAACCAGGATACACAATAAAGCATGATTCTTCAGCAATGCTTAAAACTCCTATTATTAACACTGCAGTGTCTTCCTGGTCAAACAACTCTCTGCAGAAAACCACCACCAATGCATTGCATGGACAAAAAGTGAATAATTGTTGCAGCAGCAGTGAAAGTCCCAGAGCACAGTTGGTTGGTGAATCTAATGGTCAAGGGAATAATATCCATTCGTTGAGAGTTCTTCCTGATTTTGGTGAAGTATACGGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATCTTCAGAAACTAAAACGGATGGACCCTATAGATGTTGAGACTGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGCAAACCCAGATTTTGAGGACCATAGAAGGCTGCTTGCATCATATGAGGTGGAACCTGAGTCAGATAACTATATCAATACAGATCAAGTCATGCTTGATGTGCAGTTGAAGAGTGTAACTTAG 927 0.4272 MVSKNPNPSEAFYLDPSGMSLPGILPFTAAADSLEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNVPVLSQVSGLFQSSSALLEPGYTIKHDSSAMLKTPIINTAVSSWSNNSLQKTTTNALHGQKVNNCCSSSESPRAQLVGESNGQGNNIHSLRVLPDFGEVYGFIGSVFDPNVTGHLQKLKRMDPIDVETVLLLMRNLSINLANPDFEDHRRLLASYEVEPESDNYINTDQVMLDVQLKSVT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00926 308 CDD SANT 53 96 IPR001005 -
Spst10g00926 308 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
Spst10g00926 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 98 IPR006447 GO:0003677
Spst10g00926 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Spst10g00926 308 PANTHER SWI/SNF COMPLEX-RELATED 34 269 - -
Spst10g00926 308 MobiDBLite consensus disorder prediction 101 125 - -
Spst10g00926 308 Gene3D - 54 101 - -
Spst10g00926 308 FunFam protein REVEILLE 6 isoform X1 53 101 - -
Spst10g00926 308 SMART sant 50 98 IPR001005 -
Spst10g00926 308 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Spst10g00926 308 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Spst10g00926 308 ProSiteProfiles SANT domain profile. 49 100 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00926 Spst-Chr10 10017338 10021538 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst10g00926 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00926 - - gmx:100794389 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01873 4 59302930 59304768 Spst10g00926 10 10017338 10021538 ECH
Spst10g00926 10 10017338 10021538 Spst10g00926 10 10017338 10021538 ECH
Spst4g01873 4 59302930 59304768 Spst10g00926 10 10017338 10021538 PCT