Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00916 ATGGAACATCCTTCGTACATCCCACCACCACCCATCTCACTCTCACTCCCCTCCATGGCGCAACCATCCCCACCATCATCACCACCACCACCACCACCACCACAGCAACCACCACCACCAAAAACCTACACACTAACCGCCACCTCAATATGCTACACCAAATCCCCCCCCACCAAACTACCGCTATTCTTCAACCATTGCACCACCCCCCCTCCAGCCTACATCCTCAAGGACATCTCCCTCACCGCCCACCCCTCTCAAATCCTAGCCGTCGTGGGTCCCAGCGGTGCCGGCAAGTCCACCCTCCTCGACATCCTCGCCGCCCGCACCCTCCCCTCCCACGGCACTCTCTCCCTCAACTCCGCCCCTCTCCTCCCCTCCTCCTTCCGCAAACTCTCCTCCTACGTCCCTCAACACGATCACTGCCTCCCTCTTCTCACCGTCTCCGAAACCTTCCACTTCGCCGCCACCCTCCTCAAACCCTCTGCTCCCAACCTCTCCTCTCTTGTCTCCCAACTCCTCTCCCAACTCCGCCTCTCCCATCTCGCCCACACGCGCCTCGCCCACGGTCTCTCCGGCGGCGAACGCAGAAGGGTCTCTATCGGCCTCTGCCTTCTCCACGATCCCGCCGTGTTACTCCTGGACGAACCAACTTCGGGGCTTGACAGCACTTCCGCCTTCAAAGTCATGCAAATTCTCAAACAAACTTGTCTCTCTCGCAACAGAACCATCATCCTCTCCATCCACCAACCCAGCTTCAAGATCCTCTCCTGCATTGACAGGATCTTGCTGCTTTCCAAAGGAACCGTCGTTCATCATGGAACAGTTGCCACCTTACAAGCCTTCTTGCATTCCAACGGCTTCACGGTGCCTCACCAACTCAATGCCCTGGAATATGCCATGGAGATTTTGAATGAGGTTAAGCCTCTCACTCCACCCAGGCTTCCTGAATCGCCCGAAAGTTCAAGTTCAGTAAATTTGATTTCTGATGGTGGAAGAACTGGGAGTAGTAGAGAGACTATCATGTATAAAAGCTCTAGGGTGCATGAGATTTTCACTCTTTATATAAGGTTCTGGAAGATCATTTACCGAACTAGGCAACTCCTTCTAACCAACACTGCTGAAGCACTTCTCGTGGGGCTTGTGTTGGGAACTATTTATATCAACATAGGATTTGGTAAAGAAGGGATCGAGAAAAGGTTTGGTCTATTTGCTTTCACTCTCACATTTCTCTTATCTTCCACCACAGAAACCCTCCCCATCTTCATCAACGAGAGGCCTATCATATTAAGAGAGACTTCCAGTGGGGTTTATAGGCTTTCTTCTCATCTCATTGCAAATACTCTTGTTTTCTTGCCCTACTTGTTCGTTGTTGCTGTTATATATTCTATCCCGGTTTACTTCTTAGTTGGTCTTTGTGCTTCCTGGCTTTCTTTTGCTTACTTTGTTTTGGTCATTTGGGTCATAGTTCTCATGGCAAACTCATTCGTGCTCTTCTTGAGCTCTCTTGCACCCAACTACATTGCTGGAACTTCGCTTTTGACTGTGCTTCTCGCAGCGTTTTTTCTCTTTTCTGGCTACTTTATCTCCAAGGATAGCTTACCCAAGTACTGGCTCTTCATGCACTTCTTGTCTATGTACAAATACGCTCTTGATGCCCTTCTCATTAACGAGTACTCGTGCTTGGTGACAAAGTGTTTGATATGGTACCAAGAGAATGAACAATGCATGATCACTGGTGCTGATATGCTACAGAAGAGAGGGCTAAAGGAGAGTGAAAGGTGGACCAATGTGTACTTCTTGATCGGGTTCTTTGTGCTGTATCGTTTGCTTTGCTTCTTGGTTTTGATTCGAAGGATCTCGAGATCCAAAACTTAA 1878 0.4963 MEHPSYIPPPPISLSLPSMAQPSPPSSPPPPPPPQQPPPPKTYTLTATSICYTKSPPTKLPLFFNHCTTPPPAYILKDISLTAHPSQILAVVGPSGAGKSTLLDILAARTLPSHGTLSLNSAPLLPSSFRKLSSYVPQHDHCLPLLTVSETFHFAATLLKPSAPNLSSLVSQLLSQLRLSHLAHTRLAHGLSGGERRRVSIGLCLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQTCLSRNRTIILSIHQPSFKILSCIDRILLLSKGTVVHHGTVATLQAFLHSNGFTVPHQLNALEYAMEILNEVKPLTPPRLPESPESSSSVNLISDGGRTGSSRETIMYKSSRVHEIFTLYIRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFGKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGVYRLSSHLIANTLVFLPYLFVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDSLPKYWLFMHFLSMYKYALDALLINEYSCLVTKCLIWYQENEQCMITGADMLQKRGLKESERWTNVYFLIGFFVLYRLLCFLVLIRRISRSKT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00916 625 MobiDBLite consensus disorder prediction 1 42 - -
Spst10g00916 625 Pfam ABC-2 type transporter 249 307 IPR043926 GO:0140359
Spst10g00916 625 MobiDBLite consensus disorder prediction 1 41 - -
Spst10g00916 625 Pfam ABC-2 type transporter 350 559 IPR013525 GO:0016020|GO:0140359
Spst10g00916 625 FunFam ATP-binding cassette transporter 65 285 - -
Spst10g00916 625 MobiDBLite consensus disorder prediction 312 333 - -
Spst10g00916 625 SMART AAA_5 85 269 IPR003593 GO:0016887
Spst10g00916 625 Pfam ABC transporter 76 219 IPR003439 GO:0005524
Spst10g00916 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 283 IPR027417 -
Spst10g00916 625 Gene3D - 63 287 IPR027417 -
Spst10g00916 625 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 292 IPR003439 GO:0005524
Spst10g00916 625 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 41 610 - -
Spst10g00916 625 MobiDBLite consensus disorder prediction 317 333 - -
Spst10g00916 625 ProSitePatterns ABC transporters family signature. 191 205 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00916 Spst-Chr10 9952414 9954291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00916 69 286 Calmodulin-binding Proteins AT2G36910 28.870 6.89e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00916 K05681 - gmx:100790712 943.34