Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00911 ATGGAACAGAAACACGTGTTTGCATTGAGTGTCGGAGTTGGATTGGGGGTGGGACTTGGATTGAGCACAGGTCAGGCTGTTCAAAAATGGGTGAGAGGAAGCTGTGAGTCTGATGAGATTTCTGGGGAGCAAATTGTGCTGGAGCTCAACAATAAAGTCATTGAAGGGAAGAACAGTAAAACCACATTTAGTGACTTTCCTTATTACTTAAGTGAAAGAGTCCGATTTTCGTTAACGAGTGCGGGATATGTTTATTTAAAACAAGACTTTTCCAAGCACATGAGGAACCTATGTCCAGCAAGCAGAGCTATTTTACTTTCTGGACCTGCAGAACTCTATCAGCAAAAGCTTGCCCAAGCTTTAGCTCATTACTTTGGATCGAAGTTACTGTTGCTAGACATTACTGACTTCTCGTTGGAGATGCAGAGGAAATATGGATGTCGCAGAAAAGAACCATATTTTAAAAGGTCCGTTTCTGAGGTGACTTTGGAGCGAGTCTCTGGTTTGTTTGGGTCCTTGTCAATCCTTCCTTCAATTGGCAGAACCAGAGGTACACTAATTCGACAGAATAGTGAAATTGAAAATCCCCGCAATCCTTTGAAACTTTGTAGGAATTCCTCTACTGCATGTGATACGATTAGTTCTTCTCAACGTGAATCAGATCCAGCTCTTTTGAAGTGGACAAGCGGCTTCTGTTTTGATGAAAAGATCTTCGTCTTGGTTTCTATCTCAGAAACCAGTTCCATTATTTTATACATCAAGGATGTTGAGAAGATCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAAATTCATAAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCAGATATTTGATTCTGAAGATGATACAGAAATTGATGACAAGCTCACAATGTTATTCCCTTACACTATTGAGATCCAACCACCTCAGGATGAAATCTATCTTGCAAGCTGGAAAACCAAACTGAAAGAGGACATGAAAACAATTCTGTTTCAAGATAGCAGAAACCACATTGCAGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGAATTCAGTCTGCCATGCTGACACTATGCTACTCAGTAATTGCATTGAAGAGATTGTGGCATCTGCAGTTTCTCACCACCTCATGGTGACTAAAGATCCAGAATACAAAAATGGAAAATTAGTTATATCAGCCAAAAGTTTGTCCCATGTATTGAGTTTGTTCCAGGAAAGTGAAAGTAATTCGGAGACTAAAGATTCAAACAAGGAAGTTTCTTCGGACAACGAGTATGAGAAGCGCATGAGAGCAGAAGTTGTGCCTGCAAAAGAGATAGGAGTTAGATTTGAAGATATTGGTGCATTGGATGATATCAAAGAATTACTTCAAAATGAGGTCCTGCTACCCTTCAAAAGACCAGAATTATTTAAAGGTGGGCTTTTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAAGCAATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCTCAATCTCGAACATCACTTCAAAGTGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCAGCAAAGGTTGCTCCAACTATTATTTTTATTGACGAGGTTGATAGCATGCTTGGGCAGCGGACTCAATCTGGAGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGTCCACTGGGATGGGCTATTGTCAAAACCTGGTAAGCGAATTCTGGTTCTTGCTGCGACAAACAGGCCATATGACCTTGATGAAGCGATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTATTCCATCTGCTGAGAACAGGGAAATGATCTTGAAAACAATCCTAGCTCAGGAAAAATGTGAAAATATTGACTTTAAAGAGCTTTCAATCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCTTATCGACCTGTTAGAGAGCTACTACAACAGGAGAGGTTGAAGGAAAAAGAAAAGAAGGAAAAGGAGGGAGAAGTTCAAGGCTCAGAAAATGCTTCTGATGCTAAAGAAGATGAAAAACACCAAGTCATTACATTGAGGCCTTTAATCATGGAAGACATGAGACAGGCAAAGAGTCAGGTGAATGCTAGCTTTGCAGCAGAAGGATCAATAATGAGTGAGCTGGAGGAGTGGAATGATTTATTTGGAGAAGGAGCTTCAAGGAAGAAGCAGCAGGAGCAGCTTACTTATTTTATTTAG 2298 0.4025 MEQKHVFALSVGVGLGVGLGLSTGQAVQKWVRGSCESDEISGEQIVLELNNKVIEGKNSKTTFSDFPYYLSERVRFSLTSAGYVYLKQDFSKHMRNLCPASRAILLSGPAELYQQKLAQALAHYFGSKLLLLDITDFSLEMQRKYGCRRKEPYFKRSVSEVTLERVSGLFGSLSILPSIGRTRGTLIRQNSEIENPRNPLKLCRNSSTACDTISSSQRESDPALLKWTSGFCFDEKIFVLVSISETSSIILYIKDVEKIFVRSPRLHNLFQKFIKKLSGSVLILGSQIFDSEDDTEIDDKLTMLFPYTIEIQPPQDEIYLASWKTKLKEDMKTILFQDSRNHIAEVLAASDIDCDDLNSVCHADTMLLSNCIEEIVASAVSHHLMVTKDPEYKNGKLVISAKSLSHVLSLFQESESNSETKDSNKEVSSDNEYEKRMRAEVVPAKEIGVRFEDIGALDDIKELLQNEVLLPFKRPELFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISNITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTQSGEHEAMRKIKNEFMVHWDGLLSKPGKRILVLAATNRPYDLDEAIIRRFERRIMVGIPSAENREMILKTILAQEKCENIDFKELSIMTEGYTGSDLKNLCTAAAYRPVRELLQQERLKEKEKKEKEGEVQGSENASDAKEDEKHQVITLRPLIMEDMRQAKSQVNASFAAEGSIMSELEEWNDLFGEGASRKKQQEQLTYFI 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00911 765 Coils Coil 671 705 - -
Spst10g00911 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 676 IPR027417 -
Spst10g00911 765 Gene3D - 448 620 IPR027417 -
Spst10g00911 765 MobiDBLite consensus disorder prediction 415 434 - -
Spst10g00911 765 MobiDBLite consensus disorder prediction 681 707 - -
Spst10g00911 765 Gene3D - 621 691 - -
Spst10g00911 765 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 448 623 - -
Spst10g00911 765 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 48 764 - -
Spst10g00911 765 SMART AAA_5 485 622 IPR003593 GO:0016887
Spst10g00911 765 Pfam ATPase family associated with various cellular activities (AAA) 489 618 IPR003959 GO:0005524|GO:0016887
Spst10g00911 765 Pfam AAA+ lid domain 641 682 IPR041569 -
Spst10g00911 765 MobiDBLite consensus disorder prediction 418 434 - -
Spst10g00911 765 ProSitePatterns AAA-protein family signature. 592 611 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00911 Spst-Chr10 9910127 9917014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00911 449 708 Calmodulin-binding Proteins AT3G56690 38.258 1.10e-45 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00911 - - gmx:100793760 1168.68