Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00888 ATGCCTTGCAGTTATGACTTTAGGCTTCTCATTGATCCTTCTACTTGTGTCAACCATATGTTGATATCTTGCTTTGATGTGGTATTGCTTATCATGCTTGTATTCATTATGATCCAGAAGTCAACATTAAAACCATCTCGGGGTATAATACAAGTGCAAAGATATTCGTATTTGCAGCTGGTTTCTTCCATAGCTAATAGTGTTCTTGGGTTGGTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAAAGGTTGAGGAAGTCCAAAACTGTGTTGCCTCTTGATTGGTGGTCACTAGAAATCTCTCACGGATTAACATGGTTGTTAGTGAGTTTAATGTTAAGTCTTAAGTTGAAACAACTTCCGAGAGGATGGTCAAGGCTTTATTCTATTATAATATTTTTGGTTTCTGGTATTTTCTGTGCTTCATCCTTATTTTATGCAATCAGTAGCAGAGAACTATCCCTTATGATGGCTTCAGATATTCTATCTTTTCTGGGGGCGATATTATTGTTATTATGCACATATAAGGAGTCCAGGTATGGCGACACTAACAGAGAAACTGATGAAAGTCTTTATGCCCCCTTAAATGGTCAGTCCAATAAAAAAGAATCTATTAGATATGTAACACAATTTGCCAAAGCTGGATTCTTCAATAGAATGTCGTTTTGGTGGTTGAATTCATTGATGAAAATGGGTAGAGAGAAAACACTTCATGATGAAGACATTCCAAGGTTACGGGAGGAGGATCGAGCAGAAAGTTGTTATTTGCTATTTCTGGACCAACTGAACAGAAAGAAACAAAAGGATCCATCCTCGCAACCTTCAGTTTTGAAGATTATACTGTTATGCCATTGGAAAGAAATTTTAGTATCAGGATTCTTTGCATTGCTGAAGGTACTTGCATTGTCTTTAGGACCTCTTCTTTTGAATTCTTTTATATTGGTTGCTGAGGGTAATGAGAGTTTCAAATATGAAGGTTTTGTGCTGGCAATATCACTGTTCTTTACAAAATCCATCGAGTCCCTTTCTCAGAGGCAATGGTATTTCCGTTGCAGACTTATTGGGCTGAGAGTTAGGTCATTGCTAACTGCAGCCATTTATAGAAAGCAACTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGTGAGATAATGAATTATGTCACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACTAGCTTACAGCTATCTATCTCATTAGTAATACTTTTTCGTGCTATTGGGTTGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACTGTTCTTTGCAATACTCCACTGGCCAAGTTACAACACAAGTTTCAAAGCAAACTTATGGTGGCTCAAGATGAGAGATTAAAGGCTTATTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCATGGGAAACCAAGTTTAGAAATGCTATAGAGAGATTAAGGAATGAGGAGCTCAAATGGGTGTATGCAGTGCAATTAAGAAAGGCATACAACATCTTTCTCTTTTGGTCTTCCCCTGTTTTGGTCTCCGCTGCATCCTTTGGAGCATGTTACTTTCTTAATATTCCTTTGCATGCAAATAATGTTTTCACTGTTGTGGCTACTTTGCGCCTTGTTCAAGAGCCAATTAGAACCATCCCTGATGTTATTGGAGTGGTCATTCAGGCAAAAGTTGCGTTTACTCGGATTGTAAAATTCCTGGAGGCACCTGAACTGCAGAGTGCAAATGTCACAAAAAGGTGTCTCAATGATAATATGACGGGTTCATTAACCATCAAGTCTGCCGACTTTTCATGCGAAGATAATGTGTCGGAGCCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGCAAAAGGTGGCTATTTGTGGAGAGGTTGGCTCAGGAAAATCAACTCTCCTAGCAGCGATTCTCAGAGAAGTTTCTATGACTCGGGGAGAAATTGAAGTGTATGGGAAGTTTGCCCATGTTTCTCAAACAGCATGGATACAATCAGGTACCATACGTGAGAATATATTGTTTGGGGCTTCCATGGATGCTGAAAAATACCAAGTAACACTTCATAGGTCTTCACTATTGAAGGACCTTGAGTTGTTTCCCCACGGTGATCTCACTGAAATAGGAGAGAGAGGAGTTAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCACTATATCAGCATGCTGATATATATCTCTTGGATGACCCATTCAGTGCTGTCGATGCACATACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTCCCAGCATTTGATTCTATTTTGTTGATGTCAGATGGGGAAATTATAGAAGCTGCTCCATATCACCAGTTGTTGAGCTCAAGCCAAGAATTTCAGAAGCTTGTGAAAGCCCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGTGACTTCTTCCCGGAAACATTCAAATAGTGCTAGTGATATTAAAAAAACATATATGGAGCAACATTATGAAGCATCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAAAGAGGAGACCATGGTTTCAAACCGTATATTCAGTATCTGAATCAGAATAATGGATATATATACTTCTCTGTGGCTGTTCTTTCTCAACTAATATTTGTGATTGGCCAAATATTACAAAACTCATGGATGGCCGCTAGTGTTGACAATCCTCGAGTCAGCTCTTTGAAATTGATTATAGTTTACTTGTTGATTGGAGTTATTTCATCAATGTTCTTGTTGATTAGAAGTCTTTCTACAGTCGCTTTGGGCCTTCAATCATCAAAGTCATTATTTTTACAGCTACTGAACTCCCTTTTTCGTGCTCCCATGTCATTTTATGACTCCACTCCTTTAGGACGGATACTAAGTAGGGTCTCCTCTGATCTCAACATTGTGGACCTTGATGTCGCATTCGGCTTTATTATAGCTGTGGTAGCTACTACAAATTGTTATGCTAATCTTACAGTTTTAGCTGTTGTTACTTGGCAAGTTTTGTTTGTCTCAATCCCAATGATTTATTTTGCAATCCGCTTGCAGAAATATTACTTTGCTTCTGCGAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTAGCAAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCCTTCGAGGAGGAAGATCGTTTTTTTCAGAAAAATCTTGATCTAATTGATTTGAATGCTAGTCCTTACTTCCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGATTAGAAACAGTCAGTGCTATTGTTCTTGCCTCTGCTGCACTTTGCATGGTTGTACTTCCACCTGGAAGTTTATCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACTTGTCCTTGGTATTTTCAATTCAAAATCAATGCAATATAGCGAATTATATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCTCCAGAAGTAATAGAAGGAAATCGACCTCCTGTGAATTGGCCGGTTGCTGGTCGAGTACAAATAAATGAATTGCAGATACGTTACCGGCCTGATGCACCGCTAGTACTTCGTGGGATCACATGCACATTTGAAGGAGGGGACAAAATTGGTATTGTTGGCCGGACAGGTAGTGGAAAGTCCACTCTTATAGGTGCTTTATTTCGTCTAGTGGAGCCGGCGGGTGGAAAAATCATTGTTGATGGCATTGACATTTGTTCCATTGGTCTCCATGATTTGAGGTCACGTTTTGGTATAATACCTCAGGATCCTACTCTTTTTAATGGGACAGTTAGATACAATTTGGATCCCTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTACAAGAGGCTGTCCAAGACAAAGAAGAGGGATTAGGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGACAACTATTCTGTTTGGGACGTGCTCTTCTACGGAGAAGTCGCATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTAATTTTGCAGAAAACCATTAGGGCCGAGTTTGCAGATTGTACAGTTATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCAGCAAGGTTCTTGCCATTAGTGATGGAAAACTTGTGGAGTATGATGAGCCAATGAAGTTAATTAAGAGAGAAGGATCACTGTTTGGGAATCTTGTCAAGGAATATTGGTCTCATTTTCAATCTGCAGAATCTCATTGA 4389 0.3985 MPCSYDFRLLIDPSTCVNHMLISCFDVVLLIMLVFIMIQKSTLKPSRGIIQVQRYSYLQLVSSIANSVLGLVHLCLGIWVLEERLRKSKTVLPLDWWSLEISHGLTWLLVSLMLSLKLKQLPRGWSRLYSIIIFLVSGIFCASSLFYAISSRELSLMMASDILSFLGAILLLLCTYKESRYGDTNRETDESLYAPLNGQSNKKESIRYVTQFAKAGFFNRMSFWWLNSLMKMGREKTLHDEDIPRLREEDRAESCYLLFLDQLNRKKQKDPSSQPSVLKIILLCHWKEILVSGFFALLKVLALSLGPLLLNSFILVAEGNESFKYEGFVLAISLFFTKSIESLSQRQWYFRCRLIGLRVRSLLTAAIYRKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSLQLSISLVILFRAIGLATIASLVVIVITVLCNTPLAKLQHKFQSKLMVAQDERLKAYSEALVNMKVLKLYAWETKFRNAIERLRNEELKWVYAVQLRKAYNIFLFWSSPVLVSAASFGACYFLNIPLHANNVFTVVATLRLVQEPIRTIPDVIGVVIQAKVAFTRIVKFLEAPELQSANVTKRCLNDNMTGSLTIKSADFSCEDNVSEPTLRNINLEVRPGQKVAICGEVGSGKSTLLAAILREVSMTRGEIEVYGKFAHVSQTAWIQSGTIRENILFGASMDAEKYQVTLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQHADIYLLDDPFSAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDSILLMSDGEIIEAAPYHQLLSSSQEFQKLVKAHKETAGSDRLVDVTSSRKHSNSASDIKKTYMEQHYEASKGDQLIKQEERERGDHGFKPYIQYLNQNNGYIYFSVAVLSQLIFVIGQILQNSWMAASVDNPRVSSLKLIIVYLLIGVISSMFLLIRSLSTVALGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSSDLNIVDLDVAFGFIIAVVATTNCYANLTVLAVVTWQVLFVSIPMIYFAIRLQKYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFQKNLDLIDLNASPYFHSFAANEWLIQRLETVSAIVLASAALCMVVLPPGSLSSGFIGMALSYGLSLNLSLVFSIQNQCNIANYIISVERLNQYMHIPSEAPEVIEGNRPPVNWPVAGRVQINELQIRYRPDAPLVLRGITCTFEGGDKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQDKEEGLGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRAEFADCTVITVAHRIPTVMDCSKVLAISDGKLVEYDEPMKLIKREGSLFGNLVKEYWSHFQSAESH 1462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00888 1462 SUPERFAMILY ABC transporter transmembrane region 278 583 IPR036640 GO:0005524|GO:0016020
Spst10g00888 1462 Gene3D - 1198 1450 IPR027417 -
Spst10g00888 1462 ProSitePatterns ABC transporters family signature. 730 744 IPR017871 GO:0005524|GO:0016887
Spst10g00888 1462 Gene3D ABC transporter type 1, transmembrane domain 261 587 IPR036640 GO:0005524|GO:0016020
Spst10g00888 1462 Gene3D ABC transporter type 1, transmembrane domain 862 1195 IPR036640 GO:0005524|GO:0016020
Spst10g00888 1462 FunFam ABC transporter C family member 5 863 1195 - -
Spst10g00888 1462 CDD ABC_6TM_ABCC_D1 316 578 IPR044746 GO:0140359
Spst10g00888 1462 FunFam ABC transporter C family member 5 591 836 - -
Spst10g00888 1462 CDD ABC_6TM_ABCC_D2 896 1189 IPR044726 GO:0140359
Spst10g00888 1462 Pfam ABC transporter transmembrane region 290 538 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g00888 1462 Pfam ABC transporter transmembrane region 898 1151 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g00888 1462 FunFam ABC transporter C family member 10 273 586 - -
Spst10g00888 1462 SUPERFAMILY ABC transporter transmembrane region 898 1194 IPR036640 GO:0005524|GO:0016020
Spst10g00888 1462 CDD ABCC_MRP_domain1 605 805 - -
Spst10g00888 1462 Gene3D - 603 835 IPR027417 -
Spst10g00888 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1204 1443 IPR027417 -
Spst10g00888 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 570 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g00888 1462 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 213 1450 - -
Spst10g00888 1462 Pfam ABC transporter 623 757 IPR003439 GO:0005524
Spst10g00888 1462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 827 IPR027417 -
Spst10g00888 1462 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 902 1177 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst10g00888 1462 Pfam ABC transporter 1231 1381 IPR003439 GO:0005524
Spst10g00888 1462 SMART AAA_5 632 805 IPR003593 GO:0016887
Spst10g00888 1462 SMART AAA_5 1240 1434 IPR003593 GO:0016887
Spst10g00888 1462 FunFam ABC transporter C family member 3 1197 1451 - -
Spst10g00888 1462 CDD ABCC_MRP_domain2 1212 1434 - -
Spst10g00888 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1214 1450 IPR003439 GO:0005524
Spst10g00888 1462 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 607 828 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00888 Spst-Chr10 9611671 9617790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00888 586 818 Calmodulin-binding Proteins AT2G36910 31.048 2.04e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00888 K05666 - gmx:100811468 2515.34