Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00880 ATGGCAATGCCTTTCATTCCAAAAACTCGTGACACAGAGTTGTTGTCACCAGTTGTCAGCAATGGTCATGTCTCTACAAAAGAAGATAAGTTGCAGATAGATATTGAAGCGATGCTTCCCATCACTGAGGGCAATGGCAAGCCACAGCCTAAATTGGATTCCATTATCTCTCACTATGTCCAAAGTCTCAAACAGCTCAACTTACGCAACTTGGGTTACCCATGTAATCAAAAGTTCAACTATGACAAATTAGCACCATTGCTTAATTTTCATTTGAACAATGCTGGTGATCCATTTCAAGGGTCCAGTTTGTCCCTGAATTCAACATCGTTTGAAGTTTGCCTGCTCGATTGGTTCGCAAATCTATGGGAGATAGAGAAGAATAAGTATTGGGGATACGTCACAACAGGTGGAACCGAAGGGAATCTTCATGGGATTTTAGTAGGGAGAGAACAATTTCCAGATGGGATTTTATATACCTCACAAGATTCACATTATTCAATCTTCAAAATAGCAAGAATGTATCGAATGCAATGCGTGAAGGTTAGCTCTTCGGACTCCGGAGAGATTAATTGTGATGAACTAAAGACGTTACTTCTTGCTCACAAGGACAAGCCAGCCATCATCAATCTGAACATAGGGACAACTATGAAAGGAGGAGTTGATGACCTTGATCTTGTAATAGAAGTACTCAAGGAATGTGGTTTTGCTCATGACCGATTCTATATTCATTGTGATGGAGCTTTATTCGGAATGATGTTGCCTTTTATCAAAGAAGCACCAAAGATTACCTTCAAGAAACCCATTGGAAGTATAGCCATTTCTGGGCACAAGTTTTTGGGATGTCCAATCCCTTGTGGTATTGTAATAACTCGTTCACAATACATGAACGCATTATCTAGAGACGTTGAATATATTGCTTCAAGAGATGTTACGATCACGGGTAGTCGTTCTGGGCATGCTCCCATATTTCTTTGGTATGCCATCAAAAGAAAAGGTTTCGTGGGGCTTCAAAACGAAGTGCAAAATTGCATAATGAATGCATGCCATTTACAACATCGATTACGTGATGCTGGAATTGGTGCCATGTTAAACAAGTTTAGCAACATTGTTGTCTTTGAAAGGCCTCTGGACGAAGACTTTATCCGTAAGTGGAGTTTGGCATGCATGGGAAACATTGCTCATGTAGTAGTCATGCAGCATGTTACCACTGAAATTTTGGATTCCTTTGTTTCTGAATTTCTTCAAAAACGATCCATTTGGTTCCAAGATGGACGATTTCTACCTCTGTGCATTGCAGATGACGTTGGTTCTAGACATTGTGCTTGTTCAAGACACAATTCAATGTCATGA 1353 0.4013 MAMPFIPKTRDTELLSPVVSNGHVSTKEDKLQIDIEAMLPITEGNGKPQPKLDSIISHYVQSLKQLNLRNLGYPCNQKFNYDKLAPLLNFHLNNAGDPFQGSSLSLNSTSFEVCLLDWFANLWEIEKNKYWGYVTTGGTEGNLHGILVGREQFPDGILYTSQDSHYSIFKIARMYRMQCVKVSSSDSGEINCDELKTLLLAHKDKPAIINLNIGTTMKGGVDDLDLVIEVLKECGFAHDRFYIHCDGALFGMMLPFIKEAPKITFKKPIGSIAISGHKFLGCPIPCGIVITRSQYMNALSRDVEYIASRDVTITGSRSGHAPIFLWYAIKRKGFVGLQNEVQNCIMNACHLQHRLRDAGIGAMLNKFSNIVVFERPLDEDFIRKWSLACMGNIAHVVVMQHVTTEILDSFVSEFLQKRSIWFQDGRFLPLCIADDVGSRHCACSRHNSMS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00880 450 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 271 292 IPR021115 GO:0016831
Spst10g00880 450 Pfam Pyridoxal-dependent decarboxylase conserved domain 109 359 IPR002129 GO:0016830|GO:0019752|GO:0030170
Spst10g00880 450 PANTHER - 28 447 - -
Spst10g00880 450 Gene3D - 88 329 IPR015421 GO:0003824
Spst10g00880 450 Gene3D Aspartate Aminotransferase, domain 1 330 418 IPR015422 GO:0003824
Spst10g00880 450 SUPERFAMILY PLP-dependent transferases 70 414 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00880 Spst-Chr10 9437004 9439635 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00880 170 366 Calmodulin-binding Proteins AT2G02010 25.243 3.31e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00880 K25193 - gmx:100781665 720.309