Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00876 ATGGAACACAACGTCATTGGAGCTCCGTCGCATGCGGCTCTCTATGATCTGATACTAGCGGCGGAACAACCATGCAGCCCCTTCCACCCCAAGAAGACCTTACCCGACCTTTCCTACCTCCTCCCCGACACCTTAGAAGACCTTCTCAACTTCGATATCAATCATATTTATTTCGAATTGGTCAACTCTTTATCGACGCCGCCGCCAACCGCTCCAGTAGTGTCCACTAACTGTGAAACCTCAGAGGAATCGAACGCGCAGGCCTCGAGGCCCGCGCCGGTCGGGCCCACTGCCGGAGTCGATCGTGGAAAGTCTGTGGTCTCCGGTGATCTCTGCATGGCCGGCGGCGGGGCTGACGGTGGCGAAAACGGTTGCGGAGAGAAGAAGGAGAAGCAGCGTCAGCGGCAGAGCGTTTCTGTTGACGCGTCATTGACGGCGTTGATGGAGGCCGGGCCAGCGATTACCATTGGGAAGAGGCCCATGGACTCTGAGCAGCTTGCTGAACTTGCTAGGGTTGATCCAAAGAAGGCTAAGAGGATTCTTGCCAATAGGGAATCTGCTGCTAAATCAAAGGAGAAGAAAAGGCTTTATGTGACAGAGTTGCAAAAGAATGTCCAATTGCTTGAATCTCAAGTAAATGACCTGATTAATAATATTAACATGTTAGAGAAAGAGAACACAGAAAGGGCTGATCGTGTCAAGGAGCTCAGAATAAAATTAGACGCTATGCGAGAAGAAGATCGAACTAAAGATGCTCTCAGTGCATCGTTAAAGGAAGAAGTTCAACAGCTTGAGAAAGAAATTGAAAATCTTGATGTTTTATTGAGTTACCGTTTTCCTGGGGACTTTTTCTCCCCATTCTCTTCCAAGTTACCTCTAAATCAGTTTCATACTCCTTCTCAGCAACATCTGGACCCTCAACAAACCCAACTCTCCATGCCTAGTCCCATTCCTCCCTGTGGCCAGAGTTTCGCTGGGCAATATGACCCTGACTTCTTAAACTTCTATCAGTAA 1014 0.4892 MEHNVIGAPSHAALYDLILAAEQPCSPFHPKKTLPDLSYLLPDTLEDLLNFDINHIYFELVNSLSTPPPTAPVVSTNCETSEESNAQASRPAPVGPTAGVDRGKSVVSGDLCMAGGGADGGENGCGEKKEKQRQRQSVSVDASLTALMEAGPAITIGKRPMDSEQLAELARVDPKKAKRILANRESAAKSKEKKRLYVTELQKNVQLLESQVNDLINNINMLEKENTERADRVKELRIKLDAMREEDRTKDALSASLKEEVQQLEKEIENLDVLLSYRFPGDFFSPFSSKLPLNQFHTPSQQHLDPQQTQLSMPSPIPPCGQSFAGQYDPDFLNFYQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00876 337 SMART brlzneu 171 235 IPR004827 GO:0003700|GO:0006355
Spst10g00876 337 MobiDBLite consensus disorder prediction 295 317 - -
Spst10g00876 337 CDD bZIP_plant_RF2 176 227 IPR044759 GO:0003700|GO:0006355
Spst10g00876 337 Pfam Basic region leucine zipper 173 225 IPR004827 GO:0003700|GO:0006355
Spst10g00876 337 Gene3D - 174 254 - -
Spst10g00876 337 MobiDBLite consensus disorder prediction 295 325 - -
Spst10g00876 337 MobiDBLite consensus disorder prediction 72 101 - -
Spst10g00876 337 Coils Coil 250 274 - -
Spst10g00876 337 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 308 - -
Spst10g00876 337 Coils Coil 198 246 - -
Spst10g00876 337 MobiDBLite consensus disorder prediction 117 137 - -
Spst10g00876 337 SUPERFAMILY Leucine zipper domain 175 228 IPR046347 GO:0003700|GO:0006355
Spst10g00876 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 236 IPR004827 GO:0003700|GO:0006355
Spst10g00876 337 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00876 Spst-Chr10 9351258 9356243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00876 116 265 bZIP Transcription Factor Family AT2G40620 38.667 1.85e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst10g00876 bZIP_2 2.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00876 K20557 - gmx:102664725 234.572