Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00867 ATGAAAATAAATAAATTCACCTCCCGCAAGGAAAGGGAAAGAGAGATAGCGGTTTGCTGCTGTAATTGCTGCGGTGCTGTTTTGGAAAAGAGGGAGAGAGACCCAAAAGAGACTATGCTTGGGGACTCAGCTGTTTTGGGAGCAGGAGGAGGAGGTGGCGGCGGAGAAGGTGGCGTCTCCGCCGATGCAGTGGCGGCGGTAACGCATGACGGGGCGGTGGCGGCGACCGGAGGCGGTGGTGGAGTTGGATCAAATTCAGGGGACGACGAAAGGGGTAGAATCGAAGAGGGAGAACGTAGCTTCGGCGGTAACCGGTGGCCACGACAAGAGACTTTGGCGTTGTTAAGAATACGGTCAGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAAAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGAAAAACATATCGTTTCTTTGATCAACTACAAGCCCTCGAGAACCACACTCCAACGCCCCATTCTCCCAACCCATCACCAAAACCACCACAATCAGCACCATCAAGAGTAATGGCAACAACAGCTGCATCAGTGTCACTACCAATTGCAACAGCAACAACAATTTCTTCATCATTGTCACTTCCAATTTCAACCACAACAACAGTGCCAATGCAGCCAATACTGTCCAACACCACTCTCAATAGTACTGTCCCCCATATCACTGTTCCATCAACAACACCACTCCCTATAACCATAGCCCAGCCCATTCTCACTACCCCATCAATACACCTCACAATCCCTTCCTATCCTCCAACAAACCCTACCACCAACACAACCCCACCACCCTCTTTCCCCACTCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAGAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGATCTACAAAAGAAGTTCCTGGAAGCCATAGAGAAACGGGAACACGACAGAATAGCAAGAGAAGAAGCGTGGAGAGTCCAAGAGATGCAAAGAATCAATAGAGAACGAGAAATCCTCGCACAAGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGTCAAGCATGGAGCAGGATCAACCTCGTACAACAACCACCGCATCAACAACCCCAACCACCACTACAACAAGTACCACCATCTAGTGTAGCAACAACACCTATGCAACAACCACTGTCCGTGGTTGTTACACAGCCTGTGGTGTTGCCAGTAGTCTCACAAGTGACGAACTTGGAGATAGTGAAAGTTGATAACAACAATAATAATGGCGAGAATTTCACGCCATCGAGTTCTTCAAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAGCCTGGATGCAAAGTATCAGGAGAACGGACCAAAGGGTCCTCTCTGGGAGGAGATCTCATCCTCGATGAGGAAACTCGGGTACAACCGAAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCCAAAACGTGCCCTTATTTCCACCAGCTGGACGCGCTGTACAGGGAGAAGAGCAAGGCGGATAGCGTGGCAGTGGGGGTGAAGCCGGATAGCGCGGTGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGATACGATGAGAGATAGGGACATCAGAATGGAGGACGTGGAGAATGAAGAGGATGAGTACGAGGAAGAGAGAGAGGTAGAGGGAGAGGGAGAGGAAGAAGAAGACGATGAAGAGGATGAAGAAGGTGGTGGAGGTGGGAAATATGAGATAGTGGTGAACAAAACAAGTGGTGCTTCAGTGGGTGCTTCAGTGGGGGCATCAACGGAGTAG 2079 0.5002 MKINKFTSRKEREREIAVCCCNCCGAVLEKRERDPKETMLGDSAVLGAGGGGGGGEGGVSADAVAAVTHDGAVAATGGGGGVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPTPHSPNPSPKPPQSAPSRVMATTAASVSLPIATATTISSSLSLPISTTTTVPMQPILSNTTLNSTVPHITVPSTTPLPITIAQPILTTPSIHLTIPSYPPTNPTTNTTPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEDLQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQAWSRINLVQQPPHQQPQPPLQQVPPSSVATTPMQQPLSVVVTQPVVLPVVSQVTNLEIVKVDNNNNNGENFTPSSSSRWPKVEVQALIKLRTSLDAKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSKADSVAVGVKPDSAVAPLMVRPEQQWPPQEDTMRDRDIRMEDVENEEDEYEEEREVEGEGEEEEDDEEDEEGGGGGKYEIVVNKTSGASVGASVGASTE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00867 692 MobiDBLite consensus disorder prediction 34 105 - -
Spst10g00867 692 FunFam Trihelix transcription factor GT-2 106 167 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 192 217 - -
Spst10g00867 692 FunFam Trihelix transcription factor GT-2 503 564 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 288 335 - -
Spst10g00867 692 CDD GT1 104 169 - -
Spst10g00867 692 Coils Coil 341 368 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 635 666 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 88 103 - -
Spst10g00867 692 Gene3D - 503 564 - -
Spst10g00867 692 Gene3D - 106 167 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 297 311 - -
Spst10g00867 692 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
Spst10g00867 692 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Spst10g00867 692 Pfam Myb/SANT-like DNA-binding domain 501 588 IPR044822 -
Spst10g00867 692 PANTHER FI21293P1 77 641 - -
Spst10g00867 692 Coils Coil 626 656 - -
Spst10g00867 692 ProSiteProfiles Myb-like domain profile. 501 559 IPR001005 -
Spst10g00867 692 SMART sant 102 164 IPR001005 -
Spst10g00867 692 SMART sant 499 561 IPR001005 -
Spst10g00867 692 MobiDBLite consensus disorder prediction 312 327 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 609 692 - -
Spst10g00867 692 CDD GT1 501 566 - -
Spst10g00867 692 MobiDBLite consensus disorder prediction 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00867 Spst-Chr10 9261655 9264814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00867 95 619 Trihelix Transcription Factor Family AT1G76880 53.916 1.46e-162 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst10g00867 Myb_DNA-bind_4 2.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00867 - - pvu:PHAVU_007G079700g 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03364 4 73654743 73657573 Spst10g00867 10 9261655 9264814 PCT