Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00859 ATGTCGGGTCCAAACATAAGTGCATTACGTGGACTCCCAAACATTAGGCCCATATACAGAAAAGAGCCTCAACGTTGTTGGGCGGATCAGGCCTATTATAAATCCGAGCCCATGATCATGTCCCTGGTGGCAAACGAGGATTTCCAGCACATACTTCGTGTTTTAAACACGAACGTAGATGGGAAGCAGAAGATAATGTTCGCCCTTACCTCAATCAAAGGTATAGGAAGGCGATTTGCTAACATGGTGTGCAAGAAGGCTGATGTTGACATGAACAAAAGAGCTGGCGAGCTGAGTGCCGCTGAGTTGGATAACCTCATGACTGTGGTTGCCAACCCCCGTCAATTCAAGATTCCAGACTGGTTTTTGAACAGGAAGAAGGACTACAAGGATGGGAAGTATTCTCAGGTGGTGTCCAATGCATTGGATATGAAGTTGAGGGACGACTTGGAGAGACTCAAGAAAATTAGGAACCATCGGGGCTTGAGACACTACTGGGGTCTTCGGGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTATCTAAGAAGCGTTGA 576 0.474 MSGPNISALRGLPNIRPIYRKEPQRCWADQAYYKSEPMIMSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00859 191 Hamap 30S ribosomal protein S13 [rpsM]. 51 191 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst10g00859 191 SUPERFAMILY S13-like H2TH domain 52 187 IPR010979 GO:0003676
Spst10g00859 191 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 41 191 - -
Spst10g00859 191 Gene3D - 40 119 - -
Spst10g00859 191 Coils Coil 189 191 - -
Spst10g00859 191 ProSitePatterns Ribosomal protein S13 signature. 160 173 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst10g00859 191 Gene3D 30s ribosomal protein s13, domain 2 131 181 IPR027437 -
Spst10g00859 191 FunFam 40S ribosomal protein S18 40 119 - -
Spst10g00859 191 Pfam Ribosomal protein S13/S18 53 181 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst10g00859 191 ProSiteProfiles Ribosomal protein S13 family profile. 54 184 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Spst10g00859 191 FunFam 40S ribosomal protein S18 131 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00859 Spst-Chr10 9193845 9195941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00859 40 191 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 96.053 3.23e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00859 K02964 - qsu:112019340 300.441