Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00838 ATGGATGAGAAAGTGTTTGGGTGGTTATACCAGCCATTTTGCACCCCTCATATTGGAAAACATAGTTTGGCTACTTGTCTGTCAAACGGCTTCATGACTCCTCATTTTCCGAAATGTTTCAAGGGTTCCTCTTCGGGAAACTTCGCGGCGGAGCCAGGCGGCGATGAGGAAGCGGAAGAGAGTTTCAGCTCGAGGGATGAGCTCCCGGTGCAAGGGAGTACTGTAGGTTCGGTTCCGAGCCATGCGCTGTCACCCTCTGCCTCTGCCCAAACCAACACGGAGTGGGTCCCGGATAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCAGGTTTGTCCTCTTCTCCTGGGCCTGCTCTTTTGGGCTCGGGCTGGGTTGGGCAGAAAAGAGCGCGTGAAGATGAGACGGGTGCAACCGCGAGTGGGGGTGGGGGTGAGGGTGGTTCGTCACGGAGTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGAGTTAGGCAGAGGCCGTGGGGAAAATGGGCTGCGGAGATTCGTGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCAGCCAGAGCTTACGATGACGCCGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTGCAGCGGTTCAACCTCCTCACCTTCCCGATTTTCTTCCCACCTCACTCGCCGGCTCCAGTGATGTTCCGGCGGTGACCGGCTATTCTCCGACGGTGATGCAGGGGGCGCCGTTTCAGAGCTCCTCTGATTTTCTGAGAGACTACTGGGGGTATTCTCAGCTGCTGCGGAGCACAGGGGAATTCCATGGACTCGAGCAGTGGTTCTATGATTCGCAAATGGCAGCACTTCAATCTTCTTCATCGTCGTTGTTGCCATTACCGCCTGCGTATGCACCGTCCTCTGCTTCCTTTCCTCTGTTTTCCAGCCAGCAAATGGAAGTCCTCCGGCCGCCGGGACAGCAGCCTCACGGTGGAGGAGAAGGTGGTGGCGGGTCAGAGTTTCCACCTTCGACGTGGTCAGATACCAGTGGTTATCCTCCCCCACCTCCACCACCTGGTTGA 1122 0.5651 MDEKVFGWLYQPFCTPHIGKHSLATCLSNGFMTPHFPKCFKGSSSGNFAAEPGGDEEAEESFSSRDELPVQGSTVGSVPSHALSPSASAQTNTEWVPDSGFPMMSRFMHAPSPGLSSSPGPALLGSGWVGQKRAREDETGATASGGGGEGGSSRSASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDDAALRFRGNRAKLNFPENVAAVQPPHLPDFLPTSLAGSSDVPAVTGYSPTVMQGAPFQSSSDFLRDYWGYSQLLRSTGEFHGLEQWFYDSQMAALQSSSSSLLPLPPAYAPSSASFPLFSSQQMEVLRPPGQQPHGGGEGGGGSEFPPSTWSDTSGYPPPPPPPG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00838 373 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700|GO:0006355
Spst10g00838 373 MobiDBLite consensus disorder prediction 66 97 - -
Spst10g00838 373 PANTHER DNA-BINDING DOMAIN 136 261 IPR044808 GO:0003700|GO:0009873
Spst10g00838 373 FunFam Ethylene-responsive transcription factor 2 166 225 - -
Spst10g00838 373 PRINTS Ethylene responsive element binding protein signature 190 206 IPR001471 GO:0003700|GO:0006355
Spst10g00838 373 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Spst10g00838 373 SMART rav1_2 167 230 IPR001471 GO:0003700|GO:0006355
Spst10g00838 373 MobiDBLite consensus disorder prediction 328 373 - -
Spst10g00838 373 MobiDBLite consensus disorder prediction 112 171 - -
Spst10g00838 373 MobiDBLite consensus disorder prediction 47 97 - -
Spst10g00838 373 SUPERFAMILY DNA-binding domain 167 225 IPR016177 GO:0003677
Spst10g00838 373 Pfam AP2 domain 167 216 IPR001471 GO:0003700|GO:0006355
Spst10g00838 373 CDD AP2 175 226 IPR001471 GO:0003700|GO:0006355
Spst10g00838 373 ProSiteProfiles AP2/ERF domain profile. 167 224 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00838 Spst-Chr10 8922657 8927793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00838 158 235 AP2-EREBP Transcription Factor Family AT2G33710 74.359 1.19e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst10g00838 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00838 - - aprc:113873061 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g03396 4 74210416 74212380 Spst10g00838 10 8922657 8927793 PCT