Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00828 ATGGAGGGGGTTACTGGACAAACAGGATTTAATAAGATTTTAGCTGCCCATCCAAGGAATAGTGGACATCTTTCCCAGAATCCAAATGTGCACAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACTCTGACAGTGCATGTGGGGATAGCTGCCTGAATGTTTTAACCAGCACTGAATGCACACCTGGTTATTGCCCTTGTGGTATCTTATGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTCAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAAATCAAGGTCTTATAGATTCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAGGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACAAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTTTGTGGTGCACTCAAATGCTCAGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGACACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCGGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTGGATGTTATGCTTAAAGCTGAGCAACTATCGGAGTCGACTGGTTTCCATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGGTTTAGATGCCAAGAAGATTAAAACTGATGTAGCAGATGAGGATATGCACTTGTACACACACGAAGCTGAGCAGACCCTTTCACAAAAGAATGCAATGATATCACGAATCCGAAGTAATGCTACTGGCAGAAACTATCACATTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCGTAGAGAAGAAAGTTGATGCAAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTTGGACTTAATCTTAGCATATGGTGCCGTTTGTATTTCCTTGTCTAGTTTTGTGTTCATCTCTGATTTAAATGCATCCTCCATGCAGAAAAGAAAGGATGATGTTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCTCTGTAGCAGAGAAGTGGATACGGGCTTGCTGCCTAAAATTAAAGGCTGAGTTTGATCTTTACTCGTCAATTGTCAGAAATGTCGCTTGCACTGCGCAAAGGGCACCTGGGCAAGCAAAACCTACCGATGTAGACAACGAAAACGAAATTAAGTTATTGACAGGTTGA 1548 0.407 MEGVTGQTGFNKILAAHPRNSGHLSQNPNVHKKQKEEDIAICECKYDADDSDSACGDSCLNVLTSTECTPGYCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYENQGLIDSFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFHVQSLDSVQMKGLDAKKIKTDVADEDMHLYTHEAEQTLSQKNAMISRIRSNATGRNYHIGPRSMSTKRSRAYNGGRFKNLVEKKVDAKFAAGLLASKEAQEEILNLDLILAYGAVCISLSSFVFISDLNASSMQKRKDDVTSTLDSLYDEIRPAIEEHERDSQDSVSTSVAEKWIRACCLKLKAEFDLYSSIVRNVACTAQRAPGQAKPTDVDNENEIKLLTG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00828 515 SMART set_7 90 213 IPR001214 GO:0005515
Spst10g00828 515 MobiDBLite consensus disorder prediction 496 515 - -
Spst10g00828 515 ProSiteProfiles Post-SET domain profile. 214 230 IPR003616 -
Spst10g00828 515 ProSiteProfiles SET domain profile. 90 207 IPR001214 GO:0005515
Spst10g00828 515 Pfam AWS domain 49 87 IPR006560 GO:0005634|GO:0042054
Spst10g00828 515 SMART shorttest3 37 89 IPR006560 GO:0005634|GO:0042054
Spst10g00828 515 Pfam SET domain 101 207 IPR001214 GO:0005515
Spst10g00828 515 SUPERFAMILY SET domain 38 227 IPR046341 -
Spst10g00828 515 ProSiteProfiles AWS domain profile. 37 88 IPR006560 GO:0005634|GO:0042054
Spst10g00828 515 FunFam Histone-lysine N-methyltransferase 16 242 - -
Spst10g00828 515 Gene3D SET domain 11 242 IPR046341 -
Spst10g00828 515 PANTHER SET DOMAIN PROTEINS 22 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00828 Spst-Chr10 8721448 8727244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00828 72 229 C2H2 Transcription Factor Family AT2G23740 34.444 4.75e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst10g00828 SET 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00828 - - gmx:100775294 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00828 10 8721448 8727244 Spst10g00828 10 8721448 8727244 ECH