Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00827 ATGGACCACACCTACCAAGCCATCGTCGCCGCTATCGGCAGCTTCTTCGTCGTCACGCTCCTCCTCGCCGCCGCCATCCTCCTCTGCCAGCAGTACCGCAACTCCTCCAAAGCCCGCACCCGCAGCACTCAGATTCGAACCCGACCCGGCCCCACCCGTGACGCCTCTTTCTCCCTCGCCGTCGTCGATGCCAGCTGGTCCTCCGACCCCAACCTCATCAAGATCACGTGGGAGGAGCTCGCCCTCGCCACCGACAACTTCTCCCCGCACCTCATCGTCGGGGACGGCAGCTTCGGCCTCGTCTACAAGGCTCGCCTCTCCACCAACGCCCTCGTCGCCGTCAAGAAGCTCTCCCCAGACGCCTTCCAGGGCTTCCGCGAATTTAGGGCGGAGATGGAAACCTTAAGCAAGCTCAACCACCCAAACATCGTCAGAATCCTCGGGTACTGGGCCTCAGGCCCGGAACGCTTACTGGTCTACGAGTTCCTCGAAAAGGGAAACCTCGACCACTGGCTCCACGAGCCCGATCTCTCTCACTCCCCCCTGTCCTGGGAAACCCGCGTCAACATCATCCGCGGCGTGGCCCATGGGCTTGCCTACCTCCACGGGCTCGAGAAGGCTGTCATTCACCGCGACATAAAGGCCAGCAACATCTTGCTGGACTCCAAATTCCAGTCCCACATCGCTGACTTTGGGTTGGCGCGCAGGATCGACAAAACGCACTCCCATGTGTCTACACAGTTCGCAGGCACTATAGGGTACATGCCGCCCGAGTACATAGAAGGGTCCAATGTGGCTAACACGAAGGTGGATGTGTATAGTTTTGGGATTTTGATGATTGAGACCATGTCGAGTCACCGGCCCAATTTGCCGATGAAATTGGGCCAGAAAGACATCGGGATTGTCCAGTGGGCCAGGAAGATGAAAGAGGAAAATGCGGAGATGGAGATGGTTGATGTGAATATTTCTAGAGAAGGGTTGAGTGAGGAGAGTATTAAGGAGTACGTGCGCATCGCCTGTGAGTGCACCAGTCAGATGCAGAAGGAAAGGCCCGACATGCCACGAGTTGTGCAATGGCTGGACTCCTTGCCACTCTCAAGCTTTTGA 1107 0.5763 MDHTYQAIVAAIGSFFVVTLLLAAAILLCQQYRNSSKARTRSTQIRTRPGPTRDASFSLAVVDASWSSDPNLIKITWEELALATDNFSPHLIVGDGSFGLVYKARLSTNALVAVKKLSPDAFQGFREFRAEMETLSKLNHPNIVRILGYWASGPERLLVYEFLEKGNLDHWLHEPDLSHSPLSWETRVNIIRGVAHGLAYLHGLEKAVIHRDIKASNILLDSKFQSHIADFGLARRIDKTHSHVSTQFAGTIGYMPPEYIEGSNVANTKVDVYSFGILMIETMSSHRPNLPMKLGQKDIGIVQWARKMKEENAEMEMVDVNISREGLSEESIKEYVRIACECTSQMQKERPDMPRVVQWLDSLPLSSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00827 368 CDD STKc_IRAK 93 363 - -
Spst10g00827 368 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Spst10g00827 368 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Spst10g00827 368 Gene3D Phosphorylase Kinase; domain 1 56 162 - -
Spst10g00827 368 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00827 368 Gene3D Transferase(Phosphotransferase) domain 1 163 364 - -
Spst10g00827 368 SMART serkin_6 87 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00827 368 Pfam Protein kinase domain 92 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst10g00827 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Spst10g00827 368 FunFam Phytosulfokine receptor 2 46 162 - -
Spst10g00827 368 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 362 - -
Spst10g00827 368 FunFam Phytosulfokine receptor 2 163 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00827 Spst-Chr10 8715607 8716713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00827 72 360 Receptor kinase-like Gene Family AT5G07280 44.828 9.67e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Spst10g00827 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00827 - - gmx:100802728 607.06