LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst10g00821	ATGGGCTGTGTTCAGGCTAAGCAATTGGATTTGGAAGGTCCAGACTACAGGAGTTTAGAGAGGTTGAAGTTGGATAATGGGTATGTCCCAAGTAATGACTTTGTTGCTCATAGGAGATCCACTGGTCAAAGACATGACCCTACGAAGGAAGATCATAGGCTGCATCAGCATCAGAGAGAACAACCCACAAAGAATAAAGTTGAGCCTGGTGTTGCCAATGATGGTGCAGGGCATTATGAGGACAAGGTGGTTGGAAGAGAGGGTAGGAGAGTCACGCGTCGTGATGATAAGAAATTGCCAAACAAGTGTTGCTTTGAGGATGAGATGATAGAAGGGTGGCCAAGGTGGTTGGTTGATAATGTTCCTGCACAAGTGTTGGCTGGCTTGGTTCCCAGAAGTGCTGAATCCTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTGGATCGAGACACTGGAGAAATTGTCGCCCTGAAGAAGGTTCGCTTCAATACATCAGAGCCTGAAAGTATAAAGTTTATGGCAAGAGAAATTATGATATTACAGAGACTGGATCATCCCAATGTAGTCAATCTTAAAGGATTAGCCATTTCAAGAATGCACTACAGTATATATCTAGTTTTTGACTTCATGCAAACAGATTTGGCACGAGTTATTGCTCGTCCTGAACAGAGACTATCTGAACCACAGCATTGCCATGATAGGGGAATTCTCCATCGAGATATAAAGGGGTCAAACCTTTTGATTGATAAAAATGGGATGCTCAAGATTGCAGATTTTGGACTTGCCAATTTTTACGGTCCAGATCATCATCAGCCTCTTACAAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAGTTGTTGTTAGGTGACACAGACTATGGAGTTGGTGTTGATCTGTGGAGTGCTGGATGTCTCCTGACAGAAATGTTTAAAGGATTTCCAATTATGCCTGGCAGAAATGAGGTTGAGCAAATTCATAAAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTACAACTTTTAGACCTCCAAAGTCTTATCGACCCAGCCTTATAGAAACTTTCGGGGATCTCCCTCCATCTTCTTTAGGTCTTTTATGCACTTTGCTTGCTTTGGATCCTGCATTCCGTGGCAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCTTCACAAGCCCATTGCCATGTGATCTCTCTGGTCTGCCTGTAATCTTCAGAGAGGGTGATGAGAATGTTCAAGCCAATGAACAGATCAAGTATATGAACTCTAAAATCAGGCGTTCTCGTACATATTTGGAGCGTCGAAAGAATTCAGCATCTAAGAGGCCAATAGAGCATACTGTATCTTCTAAAGAGGAATTGGTGAGGAATGCTAAACCTGAAACTCATGCTCCAACTAAAGAAACGGAAAGCACAAGCAGTACCTCATCTAGTGTAAACCCAGTAGGGACTAAGGACCAATCACCCTTTTCTCTATCTCCATTTGGGGAATTAGATCGAAAGCTATCTCCAAAAACCCATCACCATGTTAATGTTGGTGAAGAAAACATCAAGAACCTTCCTCCATTACCCAAGTCAAAACCATATGCTACCAAGAAAGATGACAGCAGATACAGACCAGACCAGTTTTTCAGGTCAGCTTCCACCAGAGAATTTAGATACTTAAAATGGGAGGAACGTTTACTCGTGGATTTTGATGATTAG	1755	0.4217	MGCVQAKQLDLEGPDYRSLERLKLDNGYVPSNDFVAHRRSTGQRHDPTKEDHRLHQHQREQPTKNKVEPGVANDGAGHYEDKVVGREGRRVTRRDDKKLPNKCCFEDEMIEGWPRWLVDNVPAQVLAGLVPRSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVRFNTSEPESIKFMAREIMILQRLDHPNVVNLKGLAISRMHYSIYLVFDFMQTDLARVIARPEQRLSEPQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLANFYGPDHHQPLTSRVVTLWYRAPELLLGDTDYGVGVDLWSAGCLLTEMFKGFPIMPGRNEVEQIHKIFRLCGTPSEEYWRKLKLSTTFRPPKSYRPSLIETFGDLPPSSLGLLCTLLALDPAFRGSASKALKNQFFFTSPLPCDLSGLPVIFREGDENVQANEQIKYMNSKIRRSRTYLERRKNSASKRPIEHTVSSKEELVRNAKPETHAPTKETESTSSTSSSVNPVGTKDQSPFSLSPFGELDRKLSPKTHHHVNVGEENIKNLPPLPKSKPYATKKDDSRYRPDQFFRSASTREFRYLKWEERLLVDFDD	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst10g00821	584	Pfam	Protein kinase domain	137	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	448	483	-	-
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	38	64	-	-
	Spst10g00821	584	Gene3D	Transferase(Phosphotransferase) domain 1	221	446	-	-
	Spst10g00821	584	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	244	256	IPR008271	GO:0004672\|GO:0006468
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	79	93	-	-
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	517	531	-	-
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	30	93	-	-
	Spst10g00821	584	SUPERFAMILY	Protein kinase-like (PK-like)	132	413	IPR011009	-
	Spst10g00821	584	SMART	serkin_6	137	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00821	584	FunFam	Putative serine/threonine-protein kinase	220	444	-	-
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	448	557	-	-
	Spst10g00821	584	Gene3D	Phosphorylase Kinase; domain 1	129	219	-	-
	Spst10g00821	584	ProSitePatterns	Protein kinases ATP-binding region signature.	143	166	IPR017441	GO:0005524
	Spst10g00821	584	FunFam	probable serine/threonine-protein kinase At1g54610	124	219	-	-
	Spst10g00821	584	ProSiteProfiles	Protein kinase domain profile.	137	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst10g00821	584	MobiDBLite	consensus disorder prediction	484	508	-	-
	Spst10g00821	584	PANTHER	CELL DIVISION PROTEIN KINASE	135	412	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst10g00821	Spst-Chr10	8676700	8680640	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst10g00821	132	420	Core Cell Cycle Gene Families	AT5G10270	44.062	4.76e-80	259

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Spst10g00821		Pkinase	3.1e-55	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst10g00821	K08819		-	gmx:100776854	982.245