Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00797 ATGACTTCACCGATCACACAGTCTGTGACTGCGACAGCATCTCCGACAATAGCATTGGGCGGAGAACCATTTGCGAATGCCTCGCTATACGTGGGCGATCTCGACGGAAATGTAAACGAGGAGCAACTCTATGATCTATTCAGTCAGGTAGCACAGGTTGTTTCAATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTTGGTTACGCCTATGTCAATTTTGCTAACGCTCAGGACGCATCCAATGCAATGGATATTTTGAACTTCACTCACGTTAATGGAAAACCGATACGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGATATGGCAATGTGTTCATCAAGAACCTGGATACATCAATTGATAACAAAGCACTACATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAACTAGCTACTGATAGTGTTAGTGGCCAATCAAAAGGTTATGGTTTTGTTCAGTTTGATAATGAAGAGACTGCCCAGAATGCAATCAAACAGTTGAATGGCATGTTGATAAATGATAAACAAGTTTACGTTGGATTCTTTGTTAGGCGTCAGGCACGGACAAATGGGTCACCTAAATTTACTAATGTATATGTGAAAAATTTATCTGAAACATTCACTGATGAGGATCTCACTAAACTATTTGGTTCCTACGGAACAATAACTAGTGCAACCATCATGAAAGATGTAAATGGAAAATCAAGATGTTTTGGATTTGTAAATTTTCAGAATCCAGATTCAGCTGCTGCCGCAGTCGAAAGTCTAAATGGAAGTACTACAAATGATAAGATTTTATATGTGGCTAGAGCTCAGAAGAAAGCAGAGAGAGAGGCTGAATTAAAAGCTAAAATAGAACAGGAAAGGATGATTAGATATGAAAAATTACAAGGAGCAAATTTATATTTAAAGAATCTTGATGACAACTTGACTACAGAAAAGTTGAAAGATCTTTTTTCGGAATTTGGGGCCATAACATCTTGTAAGGTGACGGTTGATTCACATGGACATAGCAAAGGGTCTGGTTTTGTCGCTTTTTCTACTCCTGAGGAAGCTAGTAACGCATTGAATGAAATGAATGGCAAATTGATTGGACGAAAACCTCTTTACGTTGCTGTGGCCCAGCGTAAAGAAGAGAGGAAAGCCCATTTGCAGGCTCATTTCGCTCAACTCCGATCAACGGGCGGGATGGCAATGCCGTCTGGTATCCCTGTATATCATCCAGGGACACCAAGACTTCCTCATCAACAATTATATTTTGGTCAAGGCACGCCTGGCTTCATTCCTTCCCAGCCTACTGGATATTCGTTCCAACCTCAAATTTTGTCTGGAATGCGTCCTGCTTTTGCACCCAATTTCATTAATCCTTATCATCCTCTTCAAAGACAGGTCCAGTCTGGATATAGGACAGGAGTTCGACGAAATGGAAACCTTCAACAGGTGCAACAGAACCAGAATCAGATGCTAAATCGTAATTCCAACCAAGGATATCGATACATGTCAAATGGTCGGAATATTCCAAATATGCATATGCATTTTGATGGTTCTGGAATAGCAACACCTAATAATATTCAACATGCTGGAACATTGTCTACTACACTTGCATCAGCTCTTGCATCTGCCACTCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTGTATCCTTTGGTGGAGCGACTCACGACAAACCAATACACAGCGAAGGTTACTGGAATGTTATTAGAAATGGACCAGTCAGAAGTAATCAATCTCATTGAATCCCCGGAAGATTTAAAAGCAAAAGTTTCGGAAGCCATCAAAGTATTGAATGAGGCCGTACCTGTCATCATCGCTGAATGA 1869 0.4082 MTSPITQSVTATASPTIALGGEPFANASLYVGDLDGNVNEEQLYDLFSQVAQVVSIRVCRDQTKRSSLGYAYVNFANAQDASNAMDILNFTHVNGKPIRIMFSQRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKLATDSVSGQSKGYGFVQFDNEETAQNAIKQLNGMLINDKQVYVGFFVRRQARTNGSPKFTNVYVKNLSETFTDEDLTKLFGSYGTITSATIMKDVNGKSRCFGFVNFQNPDSAAAAVESLNGSTTNDKILYVARAQKKAEREAELKAKIEQERMIRYEKLQGANLYLKNLDDNLTTEKLKDLFSEFGAITSCKVTVDSHGHSKGSGFVAFSTPEEASNALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQLRSTGGMAMPSGIPVYHPGTPRLPHQQLYFGQGTPGFIPSQPTGYSFQPQILSGMRPAFAPNFINPYHPLQRQVQSGYRTGVRRNGNLQQVQQNQNQMLNRNSNQGYRYMSNGRNIPNMHMHFDGSGIATPNNIQHAGTLSTTLASALASATPENQRMMLGEHLYPLVERLTTNQYTAKVTGMLLEMDQSEVINLIESPEDLKAKVSEAIKVLNEAVPVIIAE 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00797 622 Gene3D - 202 304 IPR012677 -
Spst10g00797 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Spst10g00797 622 Gene3D - 115 201 IPR012677 -
Spst10g00797 622 Gene3D - 21 114 IPR012677 -
Spst10g00797 622 FunFam Polyadenylate-binding protein 193 290 - -
Spst10g00797 622 Pfam Poly-adenylate binding protein, unique domain 547 612 IPR002004 GO:0003723
Spst10g00797 622 SUPERFAMILY RNA-binding domain, RBD 204 388 IPR035979 GO:0003676
Spst10g00797 622 SUPERFAMILY PABC (PABP) domain 494 615 IPR036053 GO:0003723
Spst10g00797 622 Gene3D - 305 406 IPR012677 -
Spst10g00797 622 FunFam Poly(A) binding protein cytoplasmic 1 like 300 389 - -
Spst10g00797 622 PANTHER RNA BINDING PROTEIN 26 89 - -
Spst10g00797 622 CDD RRM3_I_PABPs 204 283 - -
Spst10g00797 622 FunFam Polyadenylate-binding protein 20 115 - -
Spst10g00797 622 FunFam Polyadenylate-binding protein 535 617 - -
Spst10g00797 622 Coils Coil 277 297 - -
Spst10g00797 622 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 613 IPR006515 GO:0003723
Spst10g00797 622 FunFam Polyadenylate-binding protein 116 190 - -
Spst10g00797 622 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676
Spst10g00797 622 SMART rrm2_1 28 101 IPR003954 GO:0003676
Spst10g00797 622 SMART rrm2_1 309 381 IPR003954 GO:0003676
Spst10g00797 622 SMART rrm2_1 116 189 IPR003954 GO:0003676
Spst10g00797 622 SMART rrm2_1 206 278 IPR003954 GO:0003676
Spst10g00797 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Spst10g00797 622 Gene3D - 537 616 - -
Spst10g00797 622 CDD RRM2_I_PABPs 113 189 IPR045305 -
Spst10g00797 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 273 IPR000504 GO:0003723
Spst10g00797 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 99 IPR000504 GO:0003723
Spst10g00797 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 378 IPR000504 GO:0003723
Spst10g00797 622 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 186 IPR000504 GO:0003723
Spst10g00797 622 SMART rrm1_1 116 189 IPR000504 GO:0003723
Spst10g00797 622 SMART rrm1_1 28 101 IPR000504 GO:0003723
Spst10g00797 622 SMART rrm1_1 206 278 IPR000504 GO:0003723
Spst10g00797 622 SMART rrm1_1 309 381 IPR000504 GO:0003723
Spst10g00797 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 385 IPR000504 GO:0003723
Spst10g00797 622 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 282 IPR000504 GO:0003723
Spst10g00797 622 SMART poly_2 551 615 IPR002004 GO:0003723
Spst10g00797 622 CDD RRM4_I_PABPs 307 385 - -
Spst10g00797 622 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 617 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00797 Spst-Chr10 8475048 8478935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00797 17 616 Eukaryotic Initiation Factors Gene Family AT1G22760 56.006 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00797 K13126 - gmx:100783163 965.681