Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00781 ATGCCAAGGAAGGTTTTTGTCCGGCGACTCAGTATCGAATCCTCTCACCTAGAGTTAGGGTTTTCTATTCCAGGATTTGATCGCCGAATGGGTGAGGTTTCGGGAGACGGTTCCGCTGATTGCTTCAGCCAGATGATGTCATCTATGCCGGGTTTTCGCTTCCATCCCACTGATGAGGAGTTGGTGATGTATTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCAACGTGATTCGTGAAACCGATGTGTATAAGTGGGATCCTGAGGAGTTACCTGGGCAATCTATACTGAAAACTGGAGACAGGCAATGGTTCTTTTTCTGTCACAGAGATAGGAAGTATCCTAATGGTGCAAGGTCTAATCGAGCCACCAGGCATGGGTACTGGAAGGCAACAGGAAAGGATCGTAATGTAATATGCAATTCTAGGACAGTTGGAGTGAAAAAGACCCTGGTTTTCTATATAGGCAGAGCTCCAAGTGGTGAACGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTGTACAAGAAAAGTGGACCTGGTCCAAAAAATGGTGAACAGTATGGTGCACCATTTAATGAACAAGAGTGGGCAGATGATGACGTAGTAGATTTTAATATTCACCCAATTGATCAGGAGCCTCTTAATGATGTTAGTGAGACAGTTAATGTACCTTTGCTTGATGATGAAATCAATGACATCATTAGAGAAATTTTGGATGATGAGCTTGTCCTTGATGAGCGACATGTGAATGTTTATCCTGAATTTTCTCAGGTTGTTACTGAAGAAACACAAAGTACTGTTGTGGATCAGTTATCTGAGCCTGTCATGTTCCCTGATGCGATCAATCCTAGCAGTCAATATTTTGATGCGCAGCCCAGCTTTGACTTCAACCAGCCAATTACGTCTCATTTGCAAGTTTCTGAAGCATCTGAGGTTTCTTCTGCCTCCAACATTAGAACAAAGGGACTTGACTTGGATGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATAATGAACCTGCATTGTCAAATATGGAAAATCCTGTGGAGTACCTGCAGTTTGAAGATGGGTTAAGTGAACTTGATTTGTACCAAGATGCAGAGATGTTTCTTCGTGACTTGGGGCCAATTATTCACCAACCAGATTCACATGCATATTCAAATGCCCTTGTCAGCAACAATATTGAAAGTCAAAGTTACCAGTTCCTACCCAATCTAGAGGATGCCAACCAAACTGTTGGTGAATTCTTGATGCATGGTGAAAGAAACACCCTGATTCCATCAGAAGGCTTTGTTGATTCTTTCTCGTTATCTTCCCCAGGTGTTGTATATGAATCTGTCAGCTTTCCTACTGAAGGCAATAACAATCAAACTAGCACGGTGGAAGATGTTACTACAAATAGCTTCTCCTCTTCTCTCTGGGCCTTTGTTGAGTCAATACCGACTACTCCTGCATCAGCTGCTGAAAGTGCTTTGGTGAACCGAGCTTTGAATCGAATGTCTAGCTTCAGCCGGGTGAAGATCAAGCACCTTAACAATGCCGCAGGTAAAGACACCGCAACTATGAAGAAAGCGGGCAGAAGGGGATTTTCAATCCTTTTCTTCCCTATACTCATTGCTTTATGTGCTTTTTTATGGATTTTTGTTGGAAACTTGAGATTATTAGGGAGATGTATCTCTCCTTGA 1755 0.4268 MPRKVFVRRLSIESSHLELGFSIPGFDRRMGEVSGDGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLNVIRETDVYKWDPEELPGQSILKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVICNSRTVGVKKTLVFYIGRAPSGERTDWVMHEYTMDEEELKRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFNEQEWADDDVVDFNIHPIDQEPLNDVSETVNVPLLDDEINDIIREILDDELVLDERHVNVYPEFSQVVTEETQSTVVDQLSEPVMFPDAINPSSQYFDAQPSFDFNQPITSHLQVSEASEVSSASNIRTKGLDLDEDGFLEINDLIDNEPALSNMENPVEYLQFEDGLSELDLYQDAEMFLRDLGPIIHQPDSHAYSNALVSNNIESQSYQFLPNLEDANQTVGEFLMHGERNTLIPSEGFVDSFSLSSPGVVYESVSFPTEGNNNQTSTVEDVTTNSFSSSLWAFVESIPTTPASAAESALVNRALNRMSSFSRVKIKHLNNAAGKDTATMKKAGRRGFSILFFPILIALCAFLWIFVGNLRLLGRCISP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00781 584 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 301 - -
Spst10g00781 584 FunFam Nac domain-containing protein 86 57 201 - -
Spst10g00781 584 Gene3D NAC domain 57 200 IPR036093 GO:0003677|GO:0006355
Spst10g00781 584 Pfam No apical meristem (NAM) protein 50 174 IPR003441 GO:0003677|GO:0006355
Spst10g00781 584 SUPERFAMILY NAC domain 44 198 IPR036093 GO:0003677|GO:0006355
Spst10g00781 584 ProSiteProfiles NAC domain profile. 48 198 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00781 Spst-Chr10 8173295 8177020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00781 35 582 NAC Transcription Factor Family AT1G34190 44.406 6.03e-133 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst10g00781 NAM 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00781 - - gmx:100794925 953.74