Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00780 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCTACAGAGGAACAGCTTGTCGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACCGCTTTAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGACAAAGGAACTGACAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGACAACCAATGCTGACCCTCAGAAACAAGTTGGTGGCCCAGCTGTCCATGGTGAAGCTGTTCAGCATCAGCCTATTGGTCTCCATATTGCCATAACTGCTGCAGCTGTGATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCATCCAATCAAATCAAAATAGTTTGCAAAGTCAGTCAGCATTGGCACATGATCCTCTAACACTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTACCCAAGGCTCTTTTCCAGGCGCAAATAATGCTAGGAATGGTGACTACCCAAGTGTTACAAATGCCAAACCTTAGGATGGTTTCAGATCAAACCTCACAGTCTGTAATGAATGAAGGTCAGCTGGGTCAGCCGCCATTGGTTCAAACTCTACCTAGCATTCCGCCTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCGGCACCATAATTCATAATCCTCTTGCTCCTAATCAATTAACTGCTCATCTAAAGCCTCCAGTGCAGCCCCGAATTCCTCTTCAACAACATCAAAGTAACCTTGTACTGCCCGGAACTTTGTCAGGGCAACCAAATTTAATGCTTCCTTCTGTGCGCCCGAGTTTGGGAAGTTTGTCTGTCAGGCCTCCAATTCAACCAACAACTTCAATTGCTCTGAACCAGCAAATGCATGCCTCTTTGCTACAGCATTCTGTACATGTTGGAAACTCAACTGTTGGACATAATAGTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTCCCTCCATATCATCATCTAATTCTCAGTTATTGAATAAAGGTGATAAATCTTCTAATACAACGTATTCAAGCATGCCTTTGGGAGTGGAGAAAACAAGCATGGTTCGTGATTCTTCAGAATCTTTTTCTCACCCATCAAAGCTCATGAAATTGGATGACGGAAGGAGTGCATCTCTTTCTGCTGGGATTTCAGACGTGCCTGTCACCGATGGACCATCTCATGCCCTTGGAAGAAGCTCATTGCCTATACACGCAGCTCCTAAAACAGAAGGGCAATATCCCGAACAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACTCCAGAGCAATTGAGTTCCTTGCCGCCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATGA 1620 0.463 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNADPQKQVGGPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPQLPKALFQAQIMLGMVTTQVLQMPNLRMVSDQTSQSVMNEGQLGQPPLVQTLPSIPPHGQSKLQSGLTPYAQEGQVGTIIHNPLAPNQLTAHLKPPVQPRIPLQQHQSNLVLPGTLSGQPNLMLPSVRPSLGSLSVRPPIQPTTSIALNQQMHASLLQHSVHVGNSTVGHNSQMVRPDANFQPGPSISSSNSQLLNKGDKSSNTTYSSMPLGVEKTSMVRDSSESFSHPSKLMKLDDGRSASLSAGISDVPVTDGPSHALGRSSLPIHAAPKTEGQYPEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00780 539 Pfam Transcription termination and cleavage factor C-terminal 501 533 IPR026896 GO:0031124
Spst10g00780 539 MobiDBLite consensus disorder prediction 81 117 - -
Spst10g00780 539 FunFam Cleavage stimulating factor 64 2 118 - -
Spst10g00780 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Spst10g00780 539 CDD RRM_CSTF2_RNA15_like 9 85 - -
Spst10g00780 539 FunFam Related to Cleavage stimulation factor 492 534 - -
Spst10g00780 539 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 535 - -
Spst10g00780 539 Gene3D - 151 232 - -
Spst10g00780 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Spst10g00780 539 MobiDBLite consensus disorder prediction 81 96 - -
Spst10g00780 539 Gene3D - 494 538 IPR038192 -
Spst10g00780 539 SUPERFAMILY RNA-binding domain, RBD 5 108 IPR035979 GO:0003676
Spst10g00780 539 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 230 IPR025742 -
Spst10g00780 539 MobiDBLite consensus disorder prediction 375 419 - -
Spst10g00780 539 SMART rrm1_1 10 83 IPR000504 GO:0003723
Spst10g00780 539 FunFam Cleavage stimulating factor 64 157 232 - -
Spst10g00780 539 Gene3D - 1 118 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00780 Spst-Chr10 8160467 8167077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00780 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.47e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00780 K14407 - gmx:100806489 868.226