Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00757 ATGGGTTCGTCGAATCTACTCTTATTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCGGCTGCGAAGGTGGTGCTTATTGGGAACAATATCACTCTCTCCTTCGATGATATTGAAGCTAATTTTGCTCCAACAGTCAAAGGTTCTGGAGAATATGGAGTCTTATATTTGGCAGACCCACTTGATGCATGTACAGAACTGACAAATGAAGTTGAACAACTTCCCAATGTGAGTTCACCTTTTGCTTTGGTGATTCGAGGGGGATGTAGCTTTGAGGAAAAAATCAGAAGGGCGCAAAGGGCTGGCTTCAAAGCTGTAATTGTGTATGACGATGAAGAAGGCGGTGTCCTGGTTGCGATGGCAGGAAACTCTGCTGGTATAAAAATACACGCTGTATTTGTATCTAAAGCTTCTGGTGAAATACTAAAGAACTATGCTGGGTGGACTAATGTGGAAATATGGCTCATTCCAACTTTTGAAAATTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTACTTGCAATGTCTGCGGTGCTGGCTACTTGTTTCTTTGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGGGCTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAGGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGCGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACCTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGTTTAACTGAGCCACCACCTTCAGAATCCACACCCTTGCTCTCATCAAGCCCGGCATCTGTGGCATCCTCTGTTATATCTTCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCGGGCCAGCTTCCCAGACCCCATCTGTTTCTCGTAACTACTCCATTGCCAGTACACCTTATGTTCAACCATCTCTTAGGTCCTCCTACCATCAATCTCCCTCCCTAAGCATCAGCCGAAGCTCAGTAGATCTTAGGAATTCATCCCAAAGATCACTAGCTTCTCACTTGAATTCCCCACATTCCACAGGGTATCCATCTTTGTCATCCCTTAACTCAAGGTACATGTCTCCATACATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATATGGGTTCATCCAGTCAGCAACAACATCCTCTTCGTTATAGTGAGTCAGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1332 0.4452 MGSSNLLLFFSLVSLCAMAAAKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLADPLDACTELTNEVEQLPNVSSPFALVIRGGCSFEEKIRRAQRAGFKAVIVYDDEEGGVLVAMAGNSAGIKIHAVFVSKASGEILKNYAGWTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTEPPPSESTPLLSSSPASVASSVISSVRSSLASSSAIQIAGPASQTPSVSRNYSIASTPYVQPSLRSSYHQSPSLSISRSSVDLRNSSQRSLASHLNSPHSTGYPSLSSLNSRYMSPYIPSPSNASVSYMGSSSQQQHPLRYSESAASFSPFASTHSLPEC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00757 443 Pfam Ring finger domain 232 275 IPR001841 -
Spst10g00757 443 SUPERFAMILY RING/U-box 223 283 - -
Spst10g00757 443 CDD PA_C_RZF_like 19 162 IPR044744 -
Spst10g00757 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 155 - -
Spst10g00757 443 Pfam PA domain 74 141 IPR003137 -
Spst10g00757 443 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 157 290 - -
Spst10g00757 443 Gene3D - 18 155 - -
Spst10g00757 443 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Spst10g00757 443 MobiDBLite consensus disorder prediction 360 386 - -
Spst10g00757 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 193 280 - -
Spst10g00757 443 SMART ring_2 233 274 IPR001841 -
Spst10g00757 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 280 IPR013083 -
Spst10g00757 443 SUPERFAMILY PA domain 75 161 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00757 Spst-Chr10 7936903 7942252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00757 20 442 C3H Transcription Factor Family AT1G22670 48.951 1.67e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00757 K15692 - gmx:100791248 738.028