Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00744 ATGACATTAACCCAAATTCCTGAGAGATCATCAGTTGATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCAACGGAAGAGGAGCTTGTGGGGTACTATCTCAAGAGGAAGATAAACTCCCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAACTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACTGGAACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTGATGTCCAAGAATAGAATCATAGGGATGAGGAAGACCTTAGTCTTCTACAAGGGACGTGCCCCTAATGGCAGGAAAACAGACTGGATAATGCATGAATATAGGCATCAAACCTCTGAACATGGTCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTATGAGCCATGGTGCAGTAGTAGTAGCCATCAACAGCACTTTTTCAGAGACCAAAGCTTTGCAAGACCCTTATCAATTGCTGACATTTTGAATGAAACAAATGTGCCTCATCACCCTGCTGAAGGTCCAAGTTTTAGTCACCCCTTCAGCTCAGATCAGCAACACTTGATTCTATCAAACCAAACTGTTTTGGACAAACAACTCATTGAGCTTCCTCAGCTAGATAGTCCAACTGCAAGTATTGCAATGAAGGACTGTAACCAACAACACCACAATGGCCTCACAAATGAGGAATATTGCAGTGATGATAGGAGCAATAGCAGTGCACAAGGTATCGATTGGAAGAGCTTGGACAACTTGTTCGGGTCACAATTGAGTGACACAGCTTATTTTTCACATCCAAACTTGCCCTTCATGATGAACCATGATCAAGCTACTCATATCCTAGGATGCTTCCCTGATCATAGTTAA 996 0.4287 MTLTQIPERSSVDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGYEPWCSSSSHQQHFFRDQSFARPLSIADILNETNVPHHPAEGPSFSHPFSSDQQHLILSNQTVLDKQLIELPQLDSPTASIAMKDCNQQHHNGLTNEEYCSDDRSNSSAQGIDWKSLDNLFGSQLSDTAYFSHPNLPFMMNHDQATHILGCFPDHS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00744 331 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Spst10g00744 331 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Spst10g00744 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 259 - -
Spst10g00744 331 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Spst10g00744 331 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Spst10g00744 331 FunFam NAC domain-containing protein 27 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00744 Spst-Chr10 7776827 7780599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00744 14 329 NAC Transcription Factor Family AT1G71930 53.509 2.04e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst10g00744 NAM 7.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00744 - - var:108325420 640.573