Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00733 ATGGATCCAAAAGGAGGCTTATGTGCTAATAACTGCAGAAGGTCCTCTTCCTTAACCGCTCCTGGGAATGGATTGCAAACAAATTTGTCATCAGATCCCCCCTCTTTCTATGGGATCGGGATTGAATCACATTTCAATGAATTCGACCCACCCTCTCCTCCAATCCAATCTGTACTTCCTGGTCAATCTGACACAGATATTGAGATCCCGGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCAGTAAGCTCCAAGATTGGAATCCAAGTGCAATGTTGAATAACCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTTAATAAGAAGTGCCAACCCATTGGACAACCTCATGAACTAGTGACTCAGGAACAGCAGCTCATCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACAAACACAAATCCCTTGGTTAGTCAGATTGACCAGCTTCATGGGATTAACCTCCCTTTTGGACCAGAACCAAGTAGTGGTATTAGGCCACAAAATAATAGTGCAAATAAACTGTTTGATAAGTCCACTCAGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAATCTTCCACCCGGTTCCTATGAGATCTTACAGTTAGAAAAGGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGGGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCACATAAAGAAACCGGGTCTGAACCGAAGCTTATCAAGAGATATTCCTGCCCCTATTCTGGCTGCAAGCGTAACAAAGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACTCACTGTGACAAGAGCTACACCTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCGGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTCTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACACCAAAGGAGTGACTGAGCTACCTGATCCCCAGAACAGAGAAATCAGCAATAAGGTAGGAAGTGTGAACTTCTGTTTTGGATCAAAACCTTCAAGTGAAAATCTAGTTCCAAACATGATGGATATGAAAGGTAATATTGACGATCCTATGAATTATTTCTCATCGCTAAACTTCGAAGGCTGTAACTTTGGAGCATTTAATGAATTCCCTCAAACTCCATTTGAAGATGCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAAATTTGGTGGCGGTGAATCAAGTTCTGGGAATCTGCAGTGA 1530 0.4209 MDPKGGLCANNCRRSSSLTAPGNGLQTNLSSDPPSFYGIGIESHFNEFDPPSPPIQSVLPGQSDTDIEIPDQENCPLSDSSNTSKLQDWNPSAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPIGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTNPLVSQIDQLHGINLPFGPEPSSGIRPQNNSANKLFDKSTQNDLPNTCEMEQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYSGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVTELPDPQNREISNKVGSVNFCFGSKPSSENLVPNMMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFPQTPFEDAEGSFSFLMSGSFKFGGGESSSGNLQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00733 509 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 81 478 IPR044300 GO:0010044|GO:0010447
Spst10g00733 509 MobiDBLite consensus disorder prediction 60 84 - -
Spst10g00733 509 SMART c2h2final6 260 282 IPR013087 -
Spst10g00733 509 SMART c2h2final6 347 369 IPR013087 -
Spst10g00733 509 SMART c2h2final6 309 342 IPR013087 -
Spst10g00733 509 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Spst10g00733 509 MobiDBLite consensus disorder prediction 1 29 - -
Spst10g00733 509 Gene3D Classic Zinc Finger 244 315 - -
Spst10g00733 509 MobiDBLite consensus disorder prediction 10 29 - -
Spst10g00733 509 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Spst10g00733 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00733 Spst-Chr10 7715015 7716544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00733 228 498 C2H2 Transcription Factor Family AT1G34370 71.119 1.36e-137 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00733 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00733 - - gmx:100170687 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00733 10 7715015 7716544 Spst10g00733 10 7715015 7716544 ECH