Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00725 ATGTCTGGCAACACCAATTGCAGTGTTTACATAGGCAATCTAGATGAGAGGGTGACAGATAGGGTCTTGTATGATATATTAATACAAGCAGGACGAGTGGTAGATTTACACATTCCTAAAGATAAGGAATCAGAGAAACCAAAAGGTTTTGCCTTTGCAGAATATGAAACTGAAGAGATTGCAGACTATGCTGTCCGGCTTTTCTCGGGTCTCGTTACTCTCTACAACAGAACACTCAAGTTTGCTATATCTGCCAGAGACAGAGCTATCACTAATGGTTCTACGTCAATTACCCCCACGTCAAATTCTTCTCAAAGATCACGGCAATATCCAGCCCCATTAAATAATTCAGATCTGCATTCTGAAGCGCGCAAAAGATACTAG 384 0.4115 MSGNTNCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFAISARDRAITNGSTSITPTSNSSQRSRQYPAPLNNSDLHSEARKRY 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00725 127 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Spst10g00725 127 MobiDBLite consensus disorder prediction 92 116 - -
Spst10g00725 127 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Spst10g00725 127 Gene3D - 2 94 IPR012677 -
Spst10g00725 127 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 124 - -
Spst10g00725 127 SMART rrm1_1 8 82 IPR000504 GO:0003723
Spst10g00725 127 MobiDBLite consensus disorder prediction 92 127 - -
Spst10g00725 127 SUPERFAMILY RNA-binding domain, RBD 4 85 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00725 8 90 Eukaryotic Initiation Factors Gene Family AT1G49760 30.120 2.04e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00725 K12831 - gmx:100784532 213.772