Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00700 ATGGCAAAAGCAAACGTGATGAAACTTCAGGTTGAAGAACTAATGGGTAAAGAGAAGGTTCACATCAACATTGTGGTCATTGGCCATGTCGATTCTGGGAAGTCGACCACCACCGGTCACCTCATCTATAAGCTTGGAGGTATTGATAAGCGTGTGATTGAGAGATTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCTTTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGAATCACCATTGATATTGCCCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAATATGATTACTGGGACATCCCAAGCTGATTGTGCTGTTCTTATTATCGATTCCACTACCGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACTCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAGATGATTTGCTGCTGTAACAAGGTATATACACCTTGA 519 0.447 MAKANVMKLQVEELMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKVYTP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00700 172 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 19 172 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 PANTHER TRANSLATION FACTOR 10 169 - -
Spst10g00700 172 Pfam Elongation factor Tu GTP binding domain 20 169 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 FunFam Elongation factor 1-alpha 15 172 - -
Spst10g00700 172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 169 IPR027417 -
Spst10g00700 172 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 75 90 IPR031157 -
Spst10g00700 172 PRINTS GTP-binding elongation factor signature 82 90 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 PRINTS GTP-binding elongation factor signature 102 112 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 PRINTS GTP-binding elongation factor signature 23 36 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 PRINTS GTP-binding elongation factor signature 118 129 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 PRINTS GTP-binding elongation factor signature 162 171 IPR000795 GO:0003924|GO:0005525
Spst10g00700 172 Gene3D - 4 171 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00700 Spst-Chr10 7291127 7296560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00700 15 169 Eukaryotic Initiation Factors Gene Family AT1G07930 98.065 7.01e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00700 K03231 - oeu:111393027 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00700 10 7291127 7296560 Spst10g00700 10 7291127 7296560 ECH
Spst10g00700 10 7291127 7296560 Spst4g00611 4 13842309 13843767 PCT