Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00673 ATGGAGGTGGGTTCGGAAAGGTGCTTAGATTCTCAACTGTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCCCAGGGTCACGCGGAGCACGCTCATGGGAAAGTAGATTTTGGCCAAACCCGGGTTCCACCACTCGTCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTCAAAATGAGGCTGGTCCCTTTGAGGGAACATGAATTGGATTTGGAGGATGATTGTTTCTTGGGGAACACTGGAGTGGAGGGTCAAGAGAAACCTCCTACCTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAACGGTGGAGGGTTTTCTGTGCCTCGTTACTGTGCAGAAACCATCTTCCCGAGGTTGGACTATTCAGCTGAGCCTCCAGTTCAGACAATCATTGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACACCTAGGCGGCATCTATTGACTACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGACTCCATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCGAAGAAGGGTATTGGTGGAGGCGCCGAGTTCTCTTCTGGATGGAACCCTCTCTTTGGTGGGGGTTCTGGATTCTTGTGTGGGAGTGAGAGCAACATGGTGGGTGGTGCAAAAGGTGGTGGTGATGAGATGGTGGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCTGTAACTTGTGCTGTTAATGGTAGGCCCTTTGAGGTTGTGTACTATCCAAGGGCTAGTTCCCCAGAATATTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCGTCTAGGATCAGCTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCCATCCGTTGGCCGGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTCAAGTGTGTAAACCCTTGGCTGGTTGAATTAGTCTCTAACCTGCCCACCTTCAATCTCTCTGCATACTCACCTCCAAGAAAGAAACAACGCTTCCTACAGGACCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCTAGCAATCTTCTCAACTATACCAACTCTCTTTGCACCATTGAAAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTTTAGGTGGGTTCTCTAGGCTTGACCATGCAGCAAAGCCTATTAGGCCTCCTAGTGGAACCTATAAGAATGACTCTACCACTACTAACACCAATGTTGACATATCTTGCTTGTTGACCGTGGGAAATCCTGGCCAGAATTTTAAGGAATCCAAAGAAACAAAAGCACCCCACATCTTGTTATTTGGAAAACTCATTCACACTGAGCAAAAGATTTCAAACACTAGCTCTGTCAGTACAACTGGGAATAGTGTGTCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGCATAGGTTCTGCTTTGCACCAAAATAGTCCAATTGAGAACAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAGCACAAGGCTGATCTTGGAACCGACAACAGGTATGGCCCACGTATCGGTGGTGATCTCAGGATGAGGGAGATACACTCACTTCCCACGAAGTTTTCTAGGACATTGAACCATTCAGAAAGGATATGA 1869 0.4714 MEVGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLVPCRLSAMKYMADPDTDEVYVKMRLVPLREHELDLEDDCFLGNTGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGAEFSSGWNPLFGGGSGFLCGSESNMVGGAKGGGDEMVGRVAAESVVEAVTCAVNGRPFEVVYYPRASSPEYCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNLPTFNLSAYSPPRKKQRFLQDPYFQVINQLPMPSFSSNLLNYTNSLCTIENNSSAGIQGARHAQFGLSPSDFPFNKLPADMLLGGFSRLDHAAKPIRPPSGTYKNDSTTTNTNVDISCLLTVGNPGQNFKESKETKAPHILLFGKLIHTEQKISNTSSVSTTGNSVSEGNSLKTSNASDGIGSALHQNSPIENNSDGGSPWYKDQHKADLGTDNRYGPRIGGDLRMREIHSLPTKFSRTLNHSERI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00673 622 MobiDBLite consensus disorder prediction 530 597 - -
Spst10g00673 622 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Spst10g00673 622 Pfam Auxin response factor 268 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst10g00673 622 MobiDBLite consensus disorder prediction 104 119 - -
Spst10g00673 622 FunFam Auxin response factor 110 214 - -
Spst10g00673 622 CDD B3_DNA 111 212 IPR003340 GO:0003677
Spst10g00673 622 MobiDBLite consensus disorder prediction 530 576 - -
Spst10g00673 622 SMART B3_2 112 214 IPR003340 GO:0003677
Spst10g00673 622 FunFam Auxin response factor 306 379 - -
Spst10g00673 622 Gene3D - 110 214 IPR015300 -
Spst10g00673 622 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 553 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst10g00673 622 Gene3D - 306 378 - -
Spst10g00673 622 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Spst10g00673 622 SUPERFAMILY DNA-binding pseudobarrel domain 103 213 IPR015300 -
Spst10g00673 622 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00673 Spst-Chr10 6952761 6956337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00673 1 584 B3 DNA Binding Superfamily AT4G30080 56.926 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst10g00673 B3 2.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00673 - - ccaj:109810654 1097.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00673 10 6952761 6956337 Spst10g00673 10 6952761 6956337 ECH