Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00672 ATGGTTGGACCTAATTTCATGGATGAGTTAGACTGCGGAAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCTGTGGAGGACGTTGAGGGCGGCGCCCCCACATTGCCCTCCGTCGCAGCCCCCGGAAACTGCAACTCGCTGGCAAGCATTTGGCCCGCCGAGTCCGACTCATTTCCCGGTTCCGACTCGGTGTTTTCCGGCAACCGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCCAACTTTGTGGAGGATTCGTTTTGTGGGGGGAGCTTGACCATGAAGAAAGTGGAAGAGCCATCATGCACCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCAGTCCTTGAGAGCAGCAGTTCTTGCTCCGGTGGAAAGACGGCGCTGCCGCCGCGGAGCCCGGAGGTGTACATCCCTGTGCCATGTGGACGTGCACGCAGCAAACGTCCACGTCCTGCCACCTTCAATCCTCGCCCTGCCATGAACCTCATTTCCCCTGCCTCCTCCTTTGTTGGGGAGAACATGCAGCCTAATGTCATTTCCCCCAAGGCCTCTTCAGACTCTGAGAATTTTGCTGAGTCTCAACTTGTCCGTAAGATCCCAAAGCAAGTCTCTGGGGAGCTTAAGAAAAAAAAGGAAGTGAAGGTGCCACTTCCTGCAGCTCCTGCTGATAGCAACCACAGTGCCTTGCAACCTGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTTCAAGTCTGGCAGGCTCTTCCCTGAGTATCGCCCTGCTGCAAGCCCAACTTTTTGTCCATCTTTGCACTCCAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATTGACAAATCTGGTTTTGCAATGAATTCAGCTGCTTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAATACATGTGA 1050 0.5276 MVGPNFMDELDCGSFFDHIDDLLDFPVEDVEGGAPTLPSVAAPGNCNSLASIWPAESDSFPGSDSVFSGNRASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSCTTKEDSVHNQFHTSSPVSVLESSSSCSGGKTALPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISPKASSDSENFAESQLVRKIPKQVSGELKKKKEVKVPLPAAPADSNHSALQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIDKSGFAMNSAASPELIPNTNSSLTLEYM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00672 349 PANTHER GATA TRANSCRIPTION FACTOR 16 318 - -
Spst10g00672 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 312 - -
Spst10g00672 349 MobiDBLite consensus disorder prediction 160 179 - -
Spst10g00672 349 FunFam GATA transcription factor 244 332 - -
Spst10g00672 349 PIRSF Txn_fac_GATA_plant 3 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst10g00672 349 Gene3D - 251 299 IPR013088 GO:0006355|GO:0008270
Spst10g00672 349 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Spst10g00672 349 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Spst10g00672 349 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
Spst10g00672 349 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Spst10g00672 349 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00672 Spst-Chr10 6933837 6935755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00672 19 317 C2C2-Gata Transcription Factor Family AT4G32890 37.061 3.01e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst10g00672 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00672 - - gmx:100815693 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00672 10 6933837 6935755 Spst10g00672 10 6933837 6935755 ECH
Spst4g00691 4 24286911 24290117 Spst10g00672 10 6933837 6935755 PCT