Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00661 ATGGAATCTTCAAAGGAAAAGTGTAACAATGGCAATGATAACAGTAACAGGGACCCCCTTAACTGGGGCATGGCTGCGGATGCTTTGAGAGGTAGCCACCTTGAGGAGGTGAAGCGCATGGTGGAGGAGTACCGTAACCCCGTGGTGACGGTAGGTGGGAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCAACGGTGGCGTGTGGGTGGAGCTGGCTGAGGAGGCCCGACACGGCGTGAAATGCAGCAGTGATTGGGTGACTGATAGTTTGGTTAACGGCGTTGATACGTACGGGATCACCACAGGCTTCGGTGGAACCTCCTACAGGAGAACCAACCAAGGTGTTGCCCTCCAAAACGAACTCATCAGATTTTTAAATGCTGGCATATTTGGAAAAGATTCGGAATCGTGTCATACTTTACCTCAATCAGTCACAAGGGCATCTATGTTGGTTAGGATTAATACTTTGCTTCAAGGATATTCGGGCATAAGATTTGAAATTATGGAGGTCATAGCCAAGTTTTTGAACCAGAACATAACCCCTTGTCTCCCACTACGTGGCTCAATCACTGCATCAGGTGACATAATTCCTTTATCATATGTTGTTGGCCTCTTAATTGGGAGGCCAAACTCTAAGTCAATTGGACCTCATGGAGAAGTTCTTAATGCTAGAGAGGCCTTTCAATTAGCAGGAATTGACGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCATTAGTAAATGGCACTGCAGTGGGATCAGGTTTGGCTTCCATCATTCTTTTTGAGGCAAACTTACTTGTCATCCTCTCAGAAGTCTTGGTTGCAATTTTCGTTGAAGTTATGCAAGGAAAACCAGAATTCACAGATCACTTGATTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATAATGGAGCATATATTAGATGGCAGTTCATTTATTAAGGCAGCACAAAAGTTCCATGAAATTGACCCACTTCAAAAGCTTAAACAAGACAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTCATTAGGCATGCAACAAAGATGATTGAAAGGGAGATCAACTCTGTGAACGACAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTTCATTGTGGAAATTTTCAAGGTACTCCAATTGGCGTTTCAATGGATAACACTCGTTTGGCCATTGCATCCATTGGAAAACTTTTGTTTGCCCAATTCACGGAACTTGTTAATGACTTATACAACAATGGTTTGCCTTCAAGTTTAGCTGCTAGTCACAACCCAAGCTTGGATTATGGCTTGAAAGGAGCAGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCAAATCCTGTCACCAATCACGTCCAGAGTACCGAGCAACATAACCAAGGCGTAAACTCGTTAGGCTTAATTTCTTCAAGAAAGACAGCTGAAGCATTAGACATATTAAAGCTCATGTCCTCCACTTTCTTAGTTGCATTATGCCAGGCTATTGATCTGAGGCATTTAGAGGAAAATTTGAAGAACACTGTCAAGAATATTGTGCGTGAAGTTGCCAAAAGAGTTCTCACAATTGACATTAACCACGAGCTACATCACTTTAGGTTATATGAGGACTTGCTTAAAGTTGTAGATGGCGAGTACGTGTTTGCTTACATTGATGAACCTTGTAGGACAACCTACCCTCTAATGCAAAAGTTGAGGTTAGTCCTAATTGAACATGCATTACAAAATGGTGACAAAGTGGCAGGTTCAAGTACCTCAATTTTCCAAAAGATAAGAGCTTTCGATGAAGAGCTCAAAGCCCTTTTGCCCAAAGAGGTGGAAAGTGCTAGGATTGAAATTGAGAATGAAAATCCTGTTATTCCTAACCGAATTAAGGACTGCAGGTCTTACCCATTATACAAGTTTGTGAGAGAAAATCTGGGTACAAGTTTGCTAACAGGTGAGAAAGTGAGGTCACCGGGTGAGGAATGTGATAAGGTATATATTGCATTGTGTGAATGGAAGTTTATCGATCCTATGTTGGATTGCTTAAAGGAGTGGAATGGAGCTCCTTTACCGATATGA 2118 0.4278 MESSKEKCNNGNDNSNRDPLNWGMAADALRGSHLEEVKRMVEEYRNPVVTVGGKSLTVSQVAAVANGGVWVELAEEARHGVKCSSDWVTDSLVNGVDTYGITTGFGGTSYRRTNQGVALQNELIRFLNAGIFGKDSESCHTLPQSVTRASMLVRINTLLQGYSGIRFEIMEVIAKFLNQNITPCLPLRGSITASGDIIPLSYVVGLLIGRPNSKSIGPHGEVLNAREAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASIILFEANLLVILSEVLVAIFVEVMQGKPEFTDHLIHKLKHHPGQIEAAAIMEHILDGSSFIKAAQKFHEIDPLQKLKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHCGNFQGTPIGVSMDNTRLAIASIGKLLFAQFTELVNDLYNNGLPSSLAASHNPSLDYGLKGAEIAMASYCSELQYLANPVTNHVQSTEQHNQGVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNIVREVAKRVLTIDINHELHHFRLYEDLLKVVDGEYVFAYIDEPCRTTYPLMQKLRLVLIEHALQNGDKVAGSSTSIFQKIRAFDEELKALLPKEVESARIEIENENPVIPNRIKDCRSYPLYKFVRENLGTSLLTGEKVRSPGEECDKVYIALCEWKFIDPMLDCLKEWNGAPLPI 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00661 705 SUPERFAMILY L-aspartase-like 18 705 IPR008948 GO:0003824
Spst10g00661 705 PANTHER HISTIDINE AMMONIA-LYASE 14 705 IPR001106 -
Spst10g00661 705 Gene3D - 520 640 IPR023144 -
Spst10g00661 705 FunFam Phenylalanine ammonia-lyase 9 253 - -
Spst10g00661 705 MobiDBLite consensus disorder prediction 1 21 - -
Spst10g00661 705 NCBIfam phenylalanine ammonia-lyase 18 696 IPR005922 GO:0005737|GO:0006559|GO:0016841
Spst10g00661 705 CDD PAL-HAL 54 517 IPR001106 -
Spst10g00661 705 FunFam Phenylalanine ammonia-lyase 254 545 - -
Spst10g00661 705 Pfam Aromatic amino acid lyase 56 534 IPR001106 -
Spst10g00661 705 Gene3D - 9 253 IPR024083 -
Spst10g00661 705 Coils Coil 516 536 - -
Spst10g00661 705 Gene3D Fumarase/aspartase (Central domain) 254 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00661 Spst-Chr10 6834754 6839874 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00661 18 705 Monolignol Biosynthesis Gene Families AT3G53260 75.398 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00661 K10775 - gmx:100818777 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02892 1 37503384 37506494 Spst10g00661 10 6834754 6839874 ECH
Spst7g01025 7 18285996 18290147 Spst10g00661 10 6834754 6839874 ECH
Spst10g00661 10 6834754 6839874 Spst10g00661 10 6834754 6839874 ECH