Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00660 ATGATGGAATATTCCAACGGAAACCATAATGGTTCGTTGAACCTTTGCAATGGTAGCTACGACCCACTTAACTGGGGCAAGGCTGCGGAAGCTTTGAAAGGAAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGACTACCGTAACACGGTGGTGACGTTAGGCGGGAAGAGCCTCACGGTGTCTCAGGTGGCGGCGGTTGCCACCTGCCATAACGGCGGCGTGAGAGTGAAGCTGGCGGAGGAGAGCCGGCAGGGTGTGAAGGCGAGCAGTGAGTGGGTGATTGACAGCATGGCGAAAGGCACTGATAGCTACGGGGTCACCACGGGGTTCGGTGCAACCTCACACAGGAGAACCAAGCAAGGTGCTGCCCTCCAATACGAACTCATCAGATTTTTGAATGCTGGTATTTTTGGCAATGGCACAGAATCTTGTAACACACTACCTCATTCATCGACAAGGGCAGCTATGTTAGTAAGAATAAACACTTTGCTTCAAGGGTATTCTGGTATTCGATTTGAAATCATGGAGGCTATTGCCAAATTTTTAAACCACAATATAACCCCATGCCTTCCACTGCGTGGTACGATCACTGCATCAGGTGATTTGGTTCCTTTGTCGTATGTTGCTGGTCTTTTAATTGGAAGACCAAACTCCAAGTCAATTGGACCTAATGGGCAAGTACTTAATGCTAAAGATGCCTTTCAATTAGCGGGAATTGATGGAGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTTGTCAATGGCACTGCAGTGGGATCTGGCTTGGCTTCCATGGTTCTTTTTGAGGCAAACTTACTTGTCATCCTCTCTGAGGTTTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAGCCAGAATTCACAGACCACTTGACTCATAAGTTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACACATATTAGATGGGAGCTCATATATTAAGGAAGCACAAAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCTCCTCAATGGCTTGGACCACAAATTGAAGTCATAAGACATGCAACAAAGATGATTGAAAGGGAGATCAACTCTGTAAATGATAACCCATTGATTGATGTTTCAAGGAATAAGGCGCTTCATGGGGGGAATTTCCAAGGTACTCCAATTGGTGTTTCCATGGATAACACTCGTTTAGCCGTTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTGAATGACTTCTACAATAATGGTTTACCCTCAAATCTAACAGCTAGTCGCAATCCAAGCTTAGATTATGGATTCAAAGGTGCTGAAATAGCAATGGCATCCTATTGTTCAGAACTTCAATATCTTGCCAACCCTGTTACCAGTCATGTCCAGAGTGCTGAGCAACATAACCAAGATGTCAATTCCTTAGGTTTAATTTCTTCAAGAAAGACAGCTGAAGCAATGGAAATATTGAAGCTCATGTCTTCCACTTTCTTAGTTGCATTGTGTCAAGCCATTGATTTGAGGCATTTGGAAGAAAACATGAAGAACACTATTAAGAATACTGTGAGTCAAGTGGCCAAAAGGGTTCTCACAACCGGCATCAATGGTGAGTTACATCCTTCTAGATTCTGTGAGAAGGACTTGCTTAAAATTGTTGATCATGAATATGTCTTTGCTTACATTGATGATCCCTGTAGTGTAACTTACCCTTTAATGCAAAAGTTGAGATCAGTTCTAGTTGATCATGCACTACAAAATGGTGACAAAGAGACAAATTCAAGCACCTCAATTTTCCAAAAGATAAGTGTCTTTGAGGAAGAACTCAAAGCCCTATTGCCCAAAGAAGTAGAAAATGCTAGGATTGAAGTTGAGAACGGAAATGCAACTATTCCTAACCGAATTAAGGAATGCAGGTCTTATCCACTGTATAAGTTTGTGAGAGAAAACTTGGGTACAACTTTGTTAACAGGTGAGAAGGTGAAGTCACCTGGTGAGGAATGTGACAAGGTTTTTACTGCATTATGTGAAGGAAAGCTTATTGATCCTATGTTGGATTGTCTAAAGGAGTGGAACGGTTCTCCTCTGCCAATATGCTAA 2142 0.4281 MMEYSNGNHNGSLNLCNGSYDPLNWGKAAEALKGSHLDEVKRMVEDYRNTVVTLGGKSLTVSQVAAVATCHNGGVRVKLAEESRQGVKASSEWVIDSMAKGTDSYGVTTGFGATSHRRTKQGAALQYELIRFLNAGIFGNGTESCNTLPHSSTRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKDAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAMEILKLMSSTFLVALCQAIDLRHLEENMKNTIKNTVSQVAKRVLTTGINGELHPSRFCEKDLLKIVDHEYVFAYIDDPCSVTYPLMQKLRSVLVDHALQNGDKETNSSTSIFQKISVFEEELKALLPKEVENARIEVENGNATIPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEECDKVFTALCEGKLIDPMLDCLKEWNGSPLPIC 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00660 713 PANTHER HISTIDINE AMMONIA-LYASE 16 713 IPR001106 -
Spst10g00660 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Spst10g00660 713 CDD PAL-HAL 57 523 IPR001106 -
Spst10g00660 713 Gene3D Fumarase/aspartase (Central domain) 260 707 - -
Spst10g00660 713 Gene3D - 526 647 IPR023144 -
Spst10g00660 713 Gene3D - 14 259 IPR024083 -
Spst10g00660 713 Pfam Aromatic amino acid lyase 59 534 IPR001106 -
Spst10g00660 713 SUPERFAMILY L-aspartase-like 21 713 IPR008948 GO:0003824
Spst10g00660 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Spst10g00660 713 NCBIfam phenylalanine ammonia-lyase 21 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Spst10g00660 713 FunFam Phenylalanine ammonia-lyase 260 574 - -
Spst10g00660 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00660 Spst-Chr10 6826479 6830799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00660 21 713 Monolignol Biosynthesis Gene Families AT3G53260 82.395 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00660 K10775 - gmx:100818777 1320.84