Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00658 ATGCACAGTGCCTTGCAGTTACAGGTTTTTGAAAATCTCAATGGGCGCTATATTGAAATCCCTAATTGGCTGAAAGGGTTGCCACTGGCCCCGGAGTTTCGCCCTACAGACACTGAATTTGCTGACCCAATTGCTTACATTTCAAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAATATGTCTTTTCTAATTTGAATAGGTCACTCTTAAAGTGCCCGGATTTGGGTCCAGATAACAGTTCATTGGGTGTTTGTAATTCATTGAAAACCGGTTCTGTGGATGGTAGTAGTGATGGGGTGTCGCGAGCAGTGTTTACTACAAGGCATCAAGAACTAGGGCAGAGTCAGAGTGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCATTGTCAGGGGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAATCAAAATCGAAGTCTTTTGCAAGAAGCTTGCTAGGGTCGGTGAAGGATGTTTCTCCTCTGGTTATAGAGTCTATGTTCTGGAAGGCTACTTTAGAAAAGCCAATATATGTGGAGTATGCCAATGACGTGCCTGGGTCTGCATTTGAAGAGTCCAAGGGTCAATTTCGTTATAGTCATAGAAGGCAAAGAAAGAGAACTTATTATAAGAGTAGGTTAGATAGCTCTGATTGTAAACAAACTGCAATGGGTTGCCGAAGAGATAACCAAACTGATGAGAACAAGGGTGCTTCTGTCCAAAATGATTCTGACACATGTTTACGGATGACCAAATCAGCTGCTACTGCATCAACAATTTCATCAAGTGAAGATTCACAATCTTTTAAGGAAAAGAGTTCAGATACCAGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTGCAAATTATTGCACGATCATCTGGCTCACTGACACGTTTTATGCCAGATGATATTCCTGGTGTCACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCACGAGCTTCACAGTATGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACCGAGGGTTATGGTGGTAATATTGATCACTTAGTTGAATGCTATAACCTCTACAGTGAATTTGTAACTCAAGTACAGTTTCTTTTCTTGCCAGCCGCTTTGAAACTTTTGGGTGAAAAAACAACACTTTTGTCACCTGAGGTAATTGTTGCATCTGGAATCCCTTGTTGCAGGTTAACACAGAACCCTGGCGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGGTGCCAACTAGAGCAAAAGGTAAGTGTAGCAGAGATGAGAATGCTGAGGAAGATGAGAAAATATAATAGTAAAGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTGCGGAGAGCTGCAATGAACTATCTTCCGATGCTTTCCCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGGTATAGATGTAGAGTTCCAAGAACACTATTACCTGGTGTGCGGAGTTCTCGTTTGAGAGACCGTCAGAAAGAGGAGAGGGAATATTTAGTAAAACAGGCTTTCATAGATGACATGCTACAGGAAAACAAGCTGATATCCATTCTTCTTGGAAAGGAAGCTAGTAAAAGAGCTGTTTTATGGAATGCTGATTTACTGCCAGATTCCAGCAAAGATTTTCAGTTGCCTGACTTAACTTCTACGACTGGAACCTCTATGCCAGACATGTCAAATATTAGTTCTGCAGAAAAGAGTAGTTATCTGCTTGATGAGATGAGTTTGTATATGGATTGTTTGGCTAATTTAGACATTGGTGGTGATGATCTTCCCTGTCACTTCCAAACTGATTCTGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCTTCCTGATAATCATCTAGTTCAAGTTTCCACTCCGGACTCTACTGCTTGTGTTCATAGTTCCATATCAAGGGATCTTTCTGTTTCTGAACATTCATCATTAAAGGAGATGCCAGATCAATCATTAAATGAGTGCAATAAATTTTGGAACACCTCAAGTAAATTTTTTAGGCCTCGGATTTTCTGCCTGGAGCATGCTGTTCAAATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGGACCTGATAGATATGAAATCGATGTGCACAAAGACTATCAGAAAATAAAGGCACATGCCAGGGCAGTGGCGGAAGAGATACATGGTACTTTTGATTATAATGAGGTTCCATTAGATAGTGCATCCCCAGAAAATTTGACTCTGATCGATCTGGCTGTTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGGAATTGGGTCCATGCAAGAAATAATGCTCCATCTGAACAAGTTCCTTGGACACTAGGGACATTGTTCAATGATAAATGTCCTGCTTCCAATATTTTAGCTTTAAATTGGCAGTCACGGAGATCTCGGTCAAAAAGGTCAGGTCATTTAGCTCAGACTAAATCCTCTCACAACATTGAGAAAAAGAAGGATGATCAGTTGGGTGGAAGAATAAATGACACCTCTGCTGAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAGGTCAAAGCAAAGGTGTTTCCCTGTACCAAACATGGGCTGTGTATTCCAAGAGAAGTCCAAAAATGTGTCAACTACTTTGACTGCGGATCATAATAATTATGTTTCTAAAACAGAGAATTTCAGGACTCAGTATCCATTGCCATGTGCCTCTGCTTCTGCTGAAATGTCTGCAATGCATCCTGAACTTCAGATTGCTGAAATGTCCATGAGCACGAGAATGAATGCTACTAAGTCACAACCTTCAAATTCCATTCCTGATCATAGCTTAATGATTGAAAAAGTTGGAGCAGAGATTGAGAATCAAACCATGCAGGAATCAGATGTTGACAGAAATAATGATTTAACACGCAATTATTCTAAGATTCATTGTAATACCAGTGTCTCAGAAATATGTGGCAAGGAGAGCCAAAATTGTCAGGACAAGAAATATTCTAGCTCACTTTCAAATGCAACAGATGGAAATATTGAAATGATTAGAAAGATTGAATTTACAGAAGCAGTTATCATTGATAGCAAGTGTAATAGGTTATCATTGGATAATGAAGGGGATCAAGAATATCAGTTTACCTGCAAAAGCAACAATGAGGAAGCTGCTTTGTCACCTGCTTCAATGGTAAATCAATCTACACTTGCATCCATGGATGGAAATGTTGAAAGTCTAAATAATAATTACACCGCAGAAAAAATTAGGACTCCTATTTTCCTAGAAAAGACAGCTGAAGAAGAAATTGATTCTGTTAGTGAAAGGGTCAAGGAACCTGTTGTTGATGACGAGCAAATTAGTGAAACTACTCCAAATGAAGTTTGCGAAGTTCGAAGAGAGCTTTATGCTTCTGCAGACTTGCATAATAATGGAATCTTGGATGGTGAGATGCAACATGAAACTCAGGGTGGAAAAGACAGCAAAAGGGAAATAAATCAGTCCACTCATGTTTCAGCAAAACAATGGTGTCCAACAGAGCAGTGTCCGATTGAAAATATGGATAAAATTAATCAGGAACCTGTTTCTAGTTATCTTGCAAACGGTGAAGATAAAAGCGTAACTTCATTAGAATTAGGATGTTCTGAAGTTTCATTGGAAACCTGTCCTAACAAAGACTCATGTATTCAATTTATTCCAGATAAAGAAATGGAAATAGAAATCCAGTCAGATAATAGAATTGATGAGGAATTTTGCTCTGGCACTAATACATTGGTAAAGGACTCTTCTCTCTCAATGCAGGAATGCTCAAAAAATGAGAAAGAGATTTATGTTAAACCAAACATAAATGAAACCAATGCTGATTTGTCACAAGATAAAAGGGAGCTGGAAAGTTGTGAGTTGGCTACAGAAGATCCCAGATCGAATGCTGGGATGAGAAAAAAGAGGAAAGTGGAACAAACAACAAGGAACCAATCCAATTCCGACAACTTCATTAGAAGTCCATGTGAGGGGCTGAGGCCAAGATCTAAGAAGATTGCTGCTGGAAAAATTAGGGTAGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAAAGAGCAAGGCGATCTTCTGAAGTTTTGGTTCTTCACAAAAGTAAAAAAGATGGTGTTAAAAAGCCCCACAAGTGTGACCTCGATGGTTGCCGAATGAGTTTCAAGACTAAGGCAGAGTTATTGTTGCACAAACGAAACCTTTGCCCGCATGAAGGGTGTGGTAAGAAGTTCAGTTCTCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCACATTCGCGTACATACTGGTGAGAAGCCTTATCACTGCAAGGTTGAGGGATGCGGCCTTTCCTTCAGATTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGACACCATGTGAAACCTCGTGCTTGA 4788 0.4027 MHSALQLQVFENLNGRYIEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLGVCNSLKTGSVDGSSDGVSRAVFTTRHQELGQSQSVKKAKGTVQNPLSGVHKQVWQSGEVYTLEQFESKSKSFARSLLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFRYSHRRQRKRTYYKSRLDSSDCKQTAMGCRRDNQTDENKGASVQNDSDTCLRMTKSAATASTISSSEDSQSFKEKSSDTSNDMQGTAGWKLSNSPWNLQIIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGNIDHLVECYNLYSEFVTQVQFLFLPAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGCQLEQKVSVAEMRMLRKMRKYNSKGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRYRCRVPRTLLPGVRSSRLRDRQKEEREYLVKQAFIDDMLQENKLISILLGKEASKRAVLWNADLLPDSSKDFQLPDLTSTTGTSMPDMSNISSAEKSSYLLDEMSLYMDCLANLDIGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLTMELLPDNHLVQVSTPDSTACVHSSISRDLSVSEHSSLKEMPDQSLNECNKFWNTSSKFFRPRIFCLEHAVQIVEMLQSKGGANVLIICHSGPDRYEIDVHKDYQKIKAHARAVAEEIHGTFDYNEVPLDSASPENLTLIDLAVDGEEHDECEDWTSKLGINLRNWVHARNNAPSEQVPWTLGTLFNDKCPASNILALNWQSRRSRSKRSGHLAQTKSSHNIEKKKDDQLGGRINDTSAEKKLIQYSRRKFRSKQRCFPVPNMGCVFQEKSKNVSTTLTADHNNYVSKTENFRTQYPLPCASASAEMSAMHPELQIAEMSMSTRMNATKSQPSNSIPDHSLMIEKVGAEIENQTMQESDVDRNNDLTRNYSKIHCNTSVSEICGKESQNCQDKKYSSSLSNATDGNIEMIRKIEFTEAVIIDSKCNRLSLDNEGDQEYQFTCKSNNEEAALSPASMVNQSTLASMDGNVESLNNNYTAEKIRTPIFLEKTAEEEIDSVSERVKEPVVDDEQISETTPNEVCEVRRELYASADLHNNGILDGEMQHETQGGKDSKREINQSTHVSAKQWCPTEQCPIENMDKINQEPVSSYLANGEDKSVTSLELGCSEVSLETCPNKDSCIQFIPDKEMEIEIQSDNRIDEEFCSGTNTLVKDSSLSMQECSKNEKEIYVKPNINETNADLSQDKRELESCELATEDPRSNAGMRKKRKVEQTTRNQSNSDNFIRSPCEGLRPRSKKIAAGKIRVEINQVDKENQVAKRARRSSEVLVLHKSKKDGVKKPHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPRA 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00658 1595 ProSitePatterns Zinc finger C2H2 type domain signature. 1505 1527 IPR013087 -
Spst10g00658 1595 ProSiteProfiles JmjC domain profile. 307 521 IPR003347 -
Spst10g00658 1595 SMART cupin_9 307 484 IPR003347 -
Spst10g00658 1595 Coils Coil 1373 1393 - -
Spst10g00658 1595 ProSitePatterns Zinc finger C2H2 type domain signature. 1535 1557 IPR013087 -
Spst10g00658 1595 ProSiteProfiles JmjN domain profile. 30 71 IPR003349 -
Spst10g00658 1595 Pfam JmjC domain, hydroxylase 340 477 IPR003347 -
Spst10g00658 1595 SUPERFAMILY beta-beta-alpha zinc fingers 1504 1540 IPR036236 -
Spst10g00658 1595 SMART c2h2final6 1533 1557 IPR013087 -
Spst10g00658 1595 SMART c2h2final6 1563 1589 IPR013087 -
Spst10g00658 1595 SMART c2h2final6 1503 1527 IPR013087 -
Spst10g00658 1595 SMART c2h2final6 1480 1502 IPR013087 -
Spst10g00658 1595 Gene3D Cupin 23 525 - -
Spst10g00658 1595 PANTHER LYSINE-SPECIFIC DEMETHYLASE 22 1024 - -
Spst10g00658 1595 FunFam Probable lysine-specific demethylase ELF6 1530 1559 - -
Spst10g00658 1595 MobiDBLite consensus disorder prediction 245 265 - -
Spst10g00658 1595 Pfam jmjN domain 31 64 IPR003349 -
Spst10g00658 1595 SUPERFAMILY Clavaminate synthase-like 307 517 - -
Spst10g00658 1595 MobiDBLite consensus disorder prediction 1395 1413 - -
Spst10g00658 1595 ProSiteProfiles Zinc finger C2H2 type domain profile. 1563 1595 IPR013087 -
Spst10g00658 1595 MobiDBLite consensus disorder prediction 1395 1428 - -
Spst10g00658 1595 SUPERFAMILY beta-beta-alpha zinc fingers 1543 1593 IPR036236 -
Spst10g00658 1595 ProSitePatterns Zinc finger C2H2 type domain signature. 1565 1589 IPR013087 -
Spst10g00658 1595 ProSiteProfiles Zinc finger C2H2 type domain profile. 1533 1562 IPR013087 -
Spst10g00658 1595 Gene3D Classic Zinc Finger 1501 1589 - -
Spst10g00658 1595 MobiDBLite consensus disorder prediction 278 305 - -
Spst10g00658 1595 MobiDBLite consensus disorder prediction 905 932 - -
Spst10g00658 1595 SMART JmjN_1 29 69 IPR003349 -
Spst10g00658 1595 ProSiteProfiles Zinc finger C2H2 type domain profile. 1503 1532 IPR013087 -
Spst10g00658 1595 MobiDBLite consensus disorder prediction 917 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00658 Spst-Chr10 6796994 6807836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00658 18 949 C2H2 Transcription Factor Family AT5G04240 52.101 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00658 JmjC 1.6e-28 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00658 - - gmx:100799861 2498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00658 10 6796994 6807836 Spst10g00658 10 6796994 6807836 ECH