Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00645 ATGGGGCAAAGACCTTTGGACAGGTCAAACACAAAACCTCCATTTGATAAATTTCTTTCCAATTTCAATTGGATTCCTGTGGTTTTGATTTCACCCTCCACAATCTTCCAATTTCATTTCTCTTTCCGAATTTCTCTCTCAAGTAAAACAACACAGTATTCTCTTTCAGCTCATGGTATTGGTGGGTTTCAATTCTCCACCGTGATTCTTCCCTTCTTCGATTATTTCCCCGCAGTTCCCCATTTCCTCAATAACCTTCCAACTCGGAGGCACCTTCGATCTTGTGGTCAAAGTTTGCATCTTCGACTTTTTCTCAACATGGGTGGGGGCGAGAGCTCGAAGGGCGTTGTTTTGGGTCATTTGGTTGAGTGCATCAAGGAGATTTCTGGGTTGCCAGAGTGTCAGAACTTTTGCAAGAGGGTGTATGGGAATTTGGTTCGCAGGGTGAAGCTTTTGAGTCCTCTCTTCGAGGAATTGAAGGATACTGATGAGTCCCTCAGCGATGAACAACTTGAGAGCTTTGAGTCTCTCTTGGTTGCTTTGGATTCAGCTAAGATCCTTTTAAAGGCAGTCAGCCATGGGAGCAAGCTTTATCAGGCCTTGCAAAGGAATGATACAGCTGATGAATTCCAACAAATAACTGAAAAAATTGAAGCTGTGCTGAGTGCAATTCCTTACAACAAACTTGACATATCAGAGGAAGTTCGAGAACAGATTGAACTGGTACATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGTCGATAAACAACTAGACGCAGATATGGCAGTGGCACTAAAAGAAAAAGACCCTGATCCTGCTATACTAAAAAGACTTTCTGAAAAGTTGCATTTGAGGACAATAAATGACCTAAGGAAAGAGTCTAGTGAATTACATGAATTGTTGATCACAAGCGGTGAAGAATTAGGAGACTCTTTTGAAAGGATCACAACCCTTCTTAGCAAACTGAGGGATTGTGTGCTCACAGAAAATCCCGAAGCTGACACAAGTGAATGTGAAAAATTATCTGTTAAGCACAGGTCTCCCGTGATCCCAGATGATTTTAGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTTATTGTCTCTACTGGTCAGACATATGAAAGATCTTGCATTCAAAAATGGCTTGATGCTGGTCACAAAACCTGCCCCAAGACACAGCAGACACTTGTGCACACAGCCCTTACCCCTAACTATGTTCTGAAGAGTCTGATTGCTTTGTGGTGTGAAAGCAATGGAATTGAACTACCAAAGAAGCAAGGGAGCTGTAGAACAAAGAAATGTGGTGGAAGCAGTCATTCAGATTGTGATCGAACTGCTATTAGTGTCTTACTGGATAAACTGGCGAGTAACAACATAGAACACCAAAGGGCAGCTGCTGGTGAGCTCAGGTTGCTGGCTAAGAGGAATGCAGATAACCGAGTATGCATTGCCGAGGCAGGAGCAATACCGCCTCTTGTAGATTTGTTGTCTTGTTCAGACCCTCGAACCCAGGAGCACGCGGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCTGGAGCTATACCGGATATTGTAGATGTACTAAAAAATGGCAGCATGGAGGCTAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCGGTCCTAGATGAGAACAAGGTGCAAATTGGTGCAGCTGGAGCAATCCCTGCCCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCAATCTTTAACCTATCTATTTATCAGGGAAACAAAGCAAGAGCTGTAAAAGCTGGTATAGTGGGCCCGCTGATACAATTTCTGAAGGATGCTGGGGGTGGAATGGTAGATGAAGCACTAGCTATATTGGCAATTCTTGCAAGCCACCATGAAGGAAGGGTAGCGATTGGTCAGGCCGGGCCTATCCCTATTCTAATTGAGGTTATACGAACAGGCTCTCCACGCAACCGAGAGAATGCTGCCGCCGTCATGTGGTCACTGTGCACCGGAGATCCTCTGCTATTAAAATTAGCAAAAGAACATGGTGCAGAAGCTGCACTGCAGGAGTTATCAGAAAATGGAACTGATAGAGCCAAGAGAAAAGCTGGAAGCATACTAGAACTCTTGCAGCGAATGGAAGGGGATGCAAATCTGCGGAATTCTTAG 2214 0.4368 MGQRPLDRSNTKPPFDKFLSNFNWIPVVLISPSTIFQFHFSFRISLSSKTTQYSLSAHGIGGFQFSTVILPFFDYFPAVPHFLNNLPTRRHLRSCGQSLHLRLFLNMGGGESSKGVVLGHLVECIKEISGLPECQNFCKRVYGNLVRRVKLLSPLFEELKDTDESLSDEQLESFESLLVALDSAKILLKAVSHGSKLYQALQRNDTADEFQQITEKIEAVLSAIPYNKLDISEEVREQIELVHAQFKRAKAQTEFVDKQLDADMAVALKEKDPDPAILKRLSEKLHLRTINDLRKESSELHELLITSGEELGDSFERITTLLSKLRDCVLTENPEADTSECEKLSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLVHTALTPNYVLKSLIALWCESNGIELPKKQGSCRTKKCGGSSHSDCDRTAISVLLDKLASNNIEHQRAAAGELRLLAKRNADNRVCIAEAGAIPPLVDLLSCSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVQIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKAGIVGPLIQFLKDAGGGMVDEALAILAILASHHEGRVAIGQAGPIPILIEVIRTGSPRNRENAAAVMWSLCTGDPLLLKLAKEHGAEAALQELSENGTDRAKRKAGSILELLQRMEGDANLRNS 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00645 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 426 IPR013083 -
Spst10g00645 737 FunFam RING-type E3 ubiquitin transferase 114 227 - -
Spst10g00645 737 Gene3D - 628 734 IPR011989 -
Spst10g00645 737 Gene3D - 441 627 IPR011989 -
Spst10g00645 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 492 534 IPR000225 GO:0005515
Spst10g00645 737 SMART arm_5 522 562 IPR000225 GO:0005515
Spst10g00645 737 SMART arm_5 481 521 IPR000225 GO:0005515
Spst10g00645 737 SMART arm_5 604 644 IPR000225 GO:0005515
Spst10g00645 737 SMART arm_5 645 685 IPR000225 GO:0005515
Spst10g00645 737 SMART arm_5 563 603 IPR000225 GO:0005515
Spst10g00645 737 Pfam U-box domain 353 423 IPR003613 GO:0004842|GO:0016567
Spst10g00645 737 Gene3D - 117 226 IPR036537 GO:0007166
Spst10g00645 737 SMART Ubox_2 356 419 IPR003613 GO:0004842|GO:0016567
Spst10g00645 737 CDD RING-Ubox_PUB 354 406 IPR045210 -
Spst10g00645 737 SUPERFAMILY ARM repeat 449 725 IPR016024 -
Spst10g00645 737 FunFam RING-type E3 ubiquitin transferase 353 426 - -
Spst10g00645 737 PANTHER U BOX DOMAIN-CONTAINING 140 725 - -
Spst10g00645 737 Pfam Armadillo/beta-catenin-like repeat 564 602 IPR000225 GO:0005515
Spst10g00645 737 Pfam Armadillo/beta-catenin-like repeat 481 520 IPR000225 GO:0005515
Spst10g00645 737 SUPERFAMILY RING/U-box 352 428 - -
Spst10g00645 737 CDD MLKL_NTD 119 247 - -
Spst10g00645 737 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515
Spst10g00645 737 ProSiteProfiles U-box domain profile. 352 426 IPR003613 GO:0004842|GO:0016567
Spst10g00645 737 FunFam RING-type E3 ubiquitin transferase 436 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00645 Spst-Chr10 6627825 6633742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00645 117 732 U-box Gene Family AT3G54850 65.909 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00645 - - gmx:100777452 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00645 10 6627825 6633742 Spst10g00645 10 6627825 6633742 ECH