Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00631 ATGGCAACAAATAGGTTTATATGCGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGTTAAAACAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCATTCTGTGATGCGCTAGCACAAGAAAGTGCAAGATACCCCAGTGGCTTAAACCCCTTGGGGAGTCATTTGTTTGGCACAAACCACACTACTTTAACCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCAAAATCAGAACCAAACAACCACTAACAGCATCTTGCACCTTGGCAGTGTTGGTGCAGCTGCAAAGTTTGAGCACCTGATTCCACCTCCAAATCATTCTTCATTTGGGCACTCACCACAATCAATGCATTCCTCAGCTTTCTTCATGAATGATAACGCCAATCCAACATTATTTGAAGAACACCAATCACAACAAGGATCACTGTTCTCAAGCAAACAACTAAATGGCCTAATTCAGCTCACTGATCTTCATGGAAACAACACCAACTCCGATTCTTCACCAGTTGCTGCTCCTAATTCCAGTCTTTTCAACCTCGGCTTCTTCCCAAGTAGCAATAGCACTAGCACCATTATCCCTGATCAATTCAACAACATAAATGGTAGTGGCCAAGGAACAACAACACCACCACTCTATGTTAACCCTGCAGTAAGTGATCACGTTGGTTCAAGTTTTTCATCGCTCTTTGGTGATTCAATAGAAAACGTGTCATCGGCTCATATGTCTGCCACTGTGTTGCTTCAAAAGGCTTCTCAAATGGGTCCGACCACAACCACCAGCGGTTCTTCTTTACTTAGAGAAATGTTTAACAATGGTTACAAAGTTGAAAATGTTGACCACCACCACAATCTTCAAGGGTTGATGAACTCTATTGCCAATGGAAACACGTCCTTGTTTAGGAACATGCAAGGGAACGACAACAACCTTTGTGGGTTTCAAAACGTGGATGAGTCCAACAATAAGTTGCCCCAGAATCTTAACGTAAACTTTGGAGGTTCTGATAAGTTGACCCTAGACTTTTTGGGTGTCGGAGGAATGGTGAGAAATATGAACGGTGGATTTTCACAGAGAGAACGACTACAACAACCACGTGTCATGACTACTATGAGTTCGTTGGACCATGACCTGAAGTCAGCACAGCCAAATCATCATTTTGGAAAGTCAACTTTGCTATAA 1467 0.4329 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARYPSGLNPLGSHLFGTNHTTLTLSQVGTQLSQVQNQNQTTTNSILHLGSVGAAAKFEHLIPPPNHSSFGHSPQSMHSSAFFMNDNANPTLFEEHQSQQGSLFSSKQLNGLIQLTDLHGNNTNSDSSPVAAPNSSLFNLGFFPSSNSTSTIIPDQFNNINGSGQGTTTPPLYVNPAVSDHVGSSFSSLFGDSIENVSSAHMSATVLLQKASQMGPTTTTSGSSLLREMFNNGYKVENVDHHHNLQGLMNSIANGNTSLFRNMQGNDNNLCGFQNVDESNNKLPQNLNVNFGGSDKLTLDFLGVGGMVRNMNGGFSQRERLQQPRVMTTMSSLDHDLKSAQPNHHFGKSTLL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00631 488 FunFam Zinc finger protein MAGPIE 2 29 - -
Spst10g00631 488 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Spst10g00631 488 Gene3D Classic Zinc Finger 60 139 - -
Spst10g00631 488 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Spst10g00631 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Spst10g00631 488 SMART c2h2final6 6 28 IPR013087 -
Spst10g00631 488 SMART c2h2final6 82 102 IPR013087 -
Spst10g00631 488 SMART c2h2final6 47 77 IPR013087 -
Spst10g00631 488 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Spst10g00631 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 455 IPR031140 -
Spst10g00631 488 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00631 Spst-Chr10 6475137 6478077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00631 1 484 C2H2 Transcription Factor Family AT2G02080 45.560 2.47e-124 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst10g00631 zf-C2H2_jaz 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00631 K25870 - gmx:100780268 755.747