Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00628 ATGCGCACTACCGTCTACCAGTCTCATTTCAAAGGCCATTGTGCTGATCGAGACCTAGCTGATTCACCAACTTCAGAACACCAAGGGAAGAGAGAGCTAGTTAAGATGAAAAGAAAGGGAGGTTATGAGAACCAAGATGCTGTCAACAGAGGTGCTTGGTCTGCCGAGGAAGACCAAATCCTTATCAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGTCAGATTTCAAGAAGAGCTGGTTTAAAGCGATGTGGGAAGAGTTGCAGACTTCGATGGTTGAATTATCTAAAGCCAGATATCAAGAGAGGAAACATTTCTTCCGATGAAGAAGATCTCATTATCAGGCTACATAGCCTCTTAGGGAATAGATGGTCGCTTATTGCGGGACGATTACCAGGGCGTACAGATAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAGCACAAGCATAACAACAACATTCCCATCGAATTAAGAATTGAATCTCCACGGTGCTCAAAAAACACTTTGGGTATTGCTATGGATCCTACCAAATCTTCTCACCCAGTGAGGTGTACCGAGGTTATGATGCCAACTCGAGCACTCAATGATTCAGTCGACAACAAGAGTTTAATTTCAGCAAGTTGGAATCAAAACCCTTTTGCATCTACCGCACTAGATGACCATGATCGTTGCGCAGAAGGCTTCCCCAAACACTTTGATATAAGTGACCTGTTCATGACCCACGAGGATTGCCATTTTAATGGATATGCTTGCGTTGAAATACCCCAACATTTTGGAGATGAATCCAACGGGCTCAATGGTGCCATAGGAGAAACATGGTACGATAATTGGAAGAATGATGACTATTTCCCACTAGAATATGATGTGGATTTTTCTTTATTTTCATAG 915 0.4219 MRTTVYQSHFKGHCADRDLADSPTSEHQGKRELVKMKRKGGYENQDAVNRGAWSAEEDQILINYVHLHGEGKWGQISRRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEEKHKHNNNIPIELRIESPRCSKNTLGIAMDPTKSSHPVRCTEVMMPTRALNDSVDNKSLISASWNQNPFASTALDDHDRCAEGFPKHFDISDLFMTHEDCHFNGYACVEIPQHFGDESNGLNGAIGETWYDNWKNDDYFPLEYDVDFSLFS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00628 304 SUPERFAMILY Homeodomain-like 49 144 IPR009057 -
Spst10g00628 304 Gene3D - 106 169 - -
Spst10g00628 304 FunFam MYB-related transcription factor 49 102 - -
Spst10g00628 304 CDD SANT 52 97 IPR001005 -
Spst10g00628 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 97 IPR017930 -
Spst10g00628 304 CDD SANT 107 148 IPR001005 -
Spst10g00628 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Spst10g00628 304 FunFam Transcription factor TT2 106 174 - -
Spst10g00628 304 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
Spst10g00628 304 Pfam Myb-like DNA-binding domain 50 97 IPR001005 -
Spst10g00628 304 Gene3D - 42 103 - -
Spst10g00628 304 SMART sant 102 150 IPR001005 -
Spst10g00628 304 SMART sant 49 99 IPR001005 -
Spst10g00628 304 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Spst10g00628 304 ProSiteProfiles Myb-like domain profile. 45 97 IPR001005 -
Spst10g00628 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 45 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00628 Spst-Chr10 6454994 6456301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00628 47 152 MYB Transcription Factor Family AT3G13540 69.811 5.93e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst10g00628 Myb_DNA-binding 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst10g00628 K09422 - gmx:547459 422.165